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  5. Brara.C00925.1

Brara.C00925.1


Description : component *(PISTILLATA) of AP3-PISTILLATA organ-identity heterodimer & MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00925.1
Cluster HCAA Clusters: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
A4A49_18989 No alias agamous-like mads-box protein agl19 0.02 Orthogroups_2024-Update
At1g22130 No alias Agamous-like MADS-box protein AGL104... 0.03 Orthogroups_2024-Update
At1g65360 No alias Agamous-like MADS-box protein AGL23... 0.03 Orthogroups_2024-Update
At3g57230 No alias Agamous-like MADS-box protein AGL16... 0.03 Orthogroups_2024-Update
At5g51870 No alias AGAMOUS-like 71 [Source:TAIR;Acc:AT5G51870] 0.04 Orthogroups_2024-Update
Bradi2g31084 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Bradi3g32090 No alias AGAMOUS-like 20 0.04 Orthogroups_2024-Update
Bradi5g21700 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Brara.I00639.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 Orthogroups_2024-Update
Brara.J01588.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.03 Orthogroups_2024-Update
GRMZM2G018589 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
GRMZM2G171365 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
GRMZM2G471089 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.02G185500 No alias AGAMOUS-like 18 0.03 Orthogroups_2024-Update
Glyma.04G043800 No alias AGAMOUS-like 66 0.03 Orthogroups_2024-Update
Glyma.15G088600 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
HORVU6Hr1G002270.1 No alias MADS/AGL-type transcription factor 0.05 Orthogroups_2024-Update
LOC_Os04g52410 No alias OsMADS31 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g34940 No alias OsMADS4 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
Potri.001G328600 No alias AGAMOUS-like 8 0.05 Orthogroups_2024-Update
Potri.004G002400 No alias AGAMOUS-like 62 0.04 Orthogroups_2024-Update
Potri.004G064300 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.014G021000 No alias Function unknown 0.03 Orthogroups_2024-Update
Potri.019G077200 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.T101400 No alias AGAMOUS-like 62 0.05 Orthogroups_2024-Update
Pp1s118_161V6 No alias mikc* mads-box transcription factor 0.04 Orthogroups_2024-Update
Pp1s273_51V6 No alias mikc* mads-box transcription factor 0.03 Orthogroups_2024-Update
Pp1s55_284V6 No alias mikc* mads-box transcription factor 0.02 Orthogroups_2024-Update
Seita.4G177800.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Solyc01g093960 No alias MADS-box transcription factor (AHRD V3.3 *** A0A072TNM9_MEDTR) 0.03 Orthogroups_2024-Update
Solyc01g106170 No alias AGAMOUS-like MADS-box transcription factor (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002487 TF_Kbox 82 164
IPR002100 TF_MADSbox 10 57
No external refs found!