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  5. Brara.C00980.1

Brara.C00980.1


Description : regulatory E3 ubiquitin ligase *(RHF)


Gene families : OG_42_0002510 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002510_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00980.1
Cluster HCAA Clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
At5g22000 No alias RHF2A [Source:UniProtKB/TrEMBL;Acc:A0A178UA98] 0.04 Orthogroups_2024-Update
Bradi4g16000 No alias RING-H2 group F2A 0.04 Orthogroups_2024-Update
GRMZM2G098637 No alias RING-H2 group F2A 0.03 Orthogroups_2024-Update
Glyma.12G190800 No alias RING-H2 group F2A 0.04 Orthogroups_2024-Update
Sobic.001G063400.1 No alias regulatory E3 ubiquitin ligase *(RHF) 0.03 Orthogroups_2024-Update
Solyc06g073880 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT5G15790.4) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004594 pantothenate kinase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
BP GO:0015937 coenzyme A biosynthetic process IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 32 73
No external refs found!