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  5. Brara.C01040.1

Brara.C01040.1


Description : aminoacyl-tRNA binding factor *(eEF1A))


Gene families : OG_42_0000485 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000485_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C01040.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
169717 No alias GTP binding Elongation factor Tu family protein 0.14 Orthogroups_2024-Update
171512 No alias GTP binding Elongation factor Tu family protein 0.16 Orthogroups_2024-Update
270693 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
AC233866.1_FG006 No alias GTP binding Elongation factor Tu family protein 0.06 Orthogroups_2024-Update
At5g60390 No alias Elongation factor 1-alpha 4... 0.04 Orthogroups_2024-Update
Bradi0012s00100 No alias GTP binding Elongation factor Tu family protein 0.22 Orthogroups_2024-Update
Bradi1g06851 No alias GTP binding Elongation factor Tu family protein 0.22 Orthogroups_2024-Update
Bradi1g06861 No alias GTP binding Elongation factor Tu family protein 0.14 Orthogroups_2024-Update
Bradi1g06870 No alias GTP binding Elongation factor Tu family protein 0.22 Orthogroups_2024-Update
Bradi1g65725 No alias GTP binding Elongation factor Tu family protein 0.17 Orthogroups_2024-Update
Bradi4g12750 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
GRMZM2G001327 No alias GTP binding Elongation factor Tu family protein 0.09 Orthogroups_2024-Update
GRMZM2G057535 No alias GTP binding Elongation factor Tu family protein 0.06 Orthogroups_2024-Update
GRMZM2G110509 No alias GTP binding Elongation factor Tu family protein 0.04 Orthogroups_2024-Update
GRMZM2G149768 No alias GTP binding Elongation factor Tu family protein 0.15 Orthogroups_2024-Update
GRMZM2G151193 No alias GTP binding Elongation factor Tu family protein 0.16 Orthogroups_2024-Update
GRMZM2G153541 No alias GTP binding Elongation factor Tu family protein 0.04 Orthogroups_2024-Update
GRMZM2G154218 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
GRMZM2G343543 No alias GTP binding Elongation factor Tu family protein 0.05 Orthogroups_2024-Update
Glyma.05G089000 No alias GTP binding Elongation factor Tu family protein 0.1 Orthogroups_2024-Update
Glyma.05G114900 No alias GTP binding Elongation factor Tu family protein 0.1 Orthogroups_2024-Update
Glyma.10G212900 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
Glyma.17G186600 No alias GTP binding Elongation factor Tu family protein 0.04 Orthogroups_2024-Update
Glyma.19G052400 No alias GTP binding Elongation factor Tu family protein 0.09 Orthogroups_2024-Update
HORVU0Hr1G017020.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.07 Orthogroups_2024-Update
HORVU2Hr1G013680.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.06 Orthogroups_2024-Update
HORVU4Hr1G056740.5 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.05 Orthogroups_2024-Update
HORVU4Hr1G056830.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.03 Orthogroups_2024-Update
HORVU5Hr1G100200.3 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.08 Orthogroups_2024-Update
HORVU5Hr1G100700.3 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.08 Orthogroups_2024-Update
Kfl00046_0250 kfl00046_0250_v1.1 (o24534|ef1a_vicfa : 816.0) Elongation factor 1-alpha... 0.02 Orthogroups_2024-Update
MA_434977g0010 No alias (p25698|ef1a_soybn : 756.0) Elongation factor 1-alpha... 0.03 Orthogroups_2024-Update
MA_9512579g0020 No alias (p25698|ef1a_soybn : 118.0) Elongation factor 1-alpha... 0.03 Orthogroups_2024-Update
Mp3g23400.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.08 Orthogroups_2024-Update
Mp6g00940.1 No alias Elongation factor 1-alpha 1 OS=Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
PSME_00035389-RA No alias (p34823|ef1a2_dauca : 304.0) Elongation factor 1-alpha... 0.02 Orthogroups_2024-Update
Pp1s59_161V6 No alias elongation factor 1- 0.09 Orthogroups_2024-Update
Pp1s59_181V6 No alias elongation factor 1- 0.07 Orthogroups_2024-Update
Pp1s7_445V6 No alias elongation factor 1- 0.05 Orthogroups_2024-Update
Seita.3G265400.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.08 Orthogroups_2024-Update
Seita.3G265500.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.08 Orthogroups_2024-Update
Seita.3G265600.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.09 Orthogroups_2024-Update
Seita.3G265700.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.11 Orthogroups_2024-Update
Seita.3G265900.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.08 Orthogroups_2024-Update
Seita.9G442900.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.13 Orthogroups_2024-Update
Seita.9G443000.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.13 Orthogroups_2024-Update
Sobic.010G182100.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.34 Orthogroups_2024-Update
Sobic.010G182200.2 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.16 Orthogroups_2024-Update
Sobic.010G182300.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.38 Orthogroups_2024-Update
Sobic.010G182600.4 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.28 Orthogroups_2024-Update
Solyc06g005060 No alias elongation factor 1-alpha 0.19 Orthogroups_2024-Update
Solyc06g009960 No alias Elongation factor 1-alpha (AHRD V3.3 *-* EF1A_SOLLC) 0.1 Orthogroups_2024-Update
Solyc06g009970 No alias Elongation factor 1-alpha (AHRD V3.3 *** EF1A_SOLLC) 0.03 Orthogroups_2024-Update
Solyc11g069700 No alias Elongation factor 1-alpha (AHRD V3.3 *** EF1A_SOLLC) 0.02 Orthogroups_2024-Update
Sopen06g004650 No alias Elongation factor Tu GTP binding domain 0.4 Orthogroups_2024-Update
Sopen11g027830 No alias Elongation factor Tu GTP binding domain 0.36 Orthogroups_2024-Update
evm.model.contig_509.2 No alias (p25698|ef1a_soybn : 335.0) Elongation factor 1-alpha... 0.37 Orthogroups_2024-Update
evm.model.tig00021352.57 No alias (o64937|ef1a_orysa : 717.0) Elongation factor 1-alpha... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA 16Dec
MF GO:0005525 GTP binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000795 TF_GTP-bd_dom 7 222
IPR004161 EFTu-like_2 248 313
IPR004160 Transl_elong_EFTu/EF1A_C 322 429
No external refs found!