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  5. Brara.C01211.1

Brara.C01211.1


Description : lycopene epsilon cyclase *(LCY-e)


Gene families : OG_42_0008232 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008232_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C01211.1
Cluster HCAA Clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Bradi2g41890 No alias Lycopene beta/epsilon cyclase protein 0.02 Orthogroups_2024-Update
Cre06.g267600 No alias Lycopene beta/epsilon cyclase protein 0.02 Orthogroups_2024-Update
Kfl00536_0070 kfl00536_0070_v1.1 (at5g57030 : 439.0) Lutein-deficient 2 (LUT2) required... 0.03 Orthogroups_2024-Update
Pp1s11_269V6 No alias lycopene epsilon-cyclase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!