1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.C01232.1

Brara.C01232.1


Description : asparagine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond


Gene families : OG_42_0001608 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001608_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C01232.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
At4g17300 No alias Class II aminoacyl-tRNA and biotin synthetases... 0.03 Orthogroups_2024-Update
Brara.A01820.1 No alias asparagine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond 0.04 Orthogroups_2024-Update
Mp1g06990.1 No alias asparagine-tRNA ligase 0.02 Orthogroups_2024-Update
Mp6g15140.1 No alias asparagine-tRNA ligase 0.02 Orthogroups_2024-Update
Pp1s28_231V6 No alias asparaginyl-trna synthetase 0.03 Orthogroups_2024-Update
Seita.2G316100.1 No alias asparagine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond 0.03 Orthogroups_2024-Update
Sopen03g029680 No alias tRNA synthetases class II (D, K and N) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA 16Dec
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0004812 aminoacyl-tRNA ligase activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006418 tRNA aminoacylation for protein translation IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
CC GO:0009317 acetyl-CoA carboxylase complex IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004364 aa-tRNA-synt_II 136 197
IPR004365 NA-bd_OB_tRNA 36 114
IPR004364 aa-tRNA-synt_II 285 548
No external refs found!