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  5. Brara.C01470.1

Brara.C01470.1


Description : component *(uS10) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001666_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C01470.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
115495 No alias Ribosomal protein S10p/S20e family protein 0.22 Orthogroups_2024-Update
A4A49_09412 No alias 40s ribosomal protein s20-2 0.12 Orthogroups_2024-Update
At3g47370 No alias 40S ribosomal protein S20-2... 0.05 Orthogroups_2024-Update
Bradi1g51650 No alias Ribosomal protein S10p/S20e family protein 0.27 Orthogroups_2024-Update
Cre16.g660150 No alias Ribosomal protein S10p/S20e family protein 0.32 Orthogroups_2024-Update
Glyma.03G142200 No alias Ribosomal protein S10p/S20e family protein 0.13 Orthogroups_2024-Update
Glyma.03G142300 No alias Ribosomal protein S10p/S20e family protein 0.17 Orthogroups_2024-Update
Glyma.11G002400 No alias Ribosomal protein S10p/S20e family protein 0.11 Orthogroups_2024-Update
Glyma.19G145000 No alias Ribosomal protein S10p/S20e family protein 0.06 Orthogroups_2024-Update
Glyma.19G145100 No alias Ribosomal protein S10p/S20e family protein 0.09 Orthogroups_2024-Update
HORVU7Hr1G028050.5 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Kfl00331_0150 kfl00331_0150_v1.1 (at5g62300 : 189.0) Ribosomal protein S10p/S20e family... 0.06 Orthogroups_2024-Update
MA_10429759g0010 No alias (at5g62300 : 200.0) Ribosomal protein S10p/S20e family... 0.08 Orthogroups_2024-Update
Mp2g09440.1 No alias component RPS20 of SSU proteome 0.12 Orthogroups_2024-Update
PSME_00007666-RA No alias (at5g62300 : 193.0) Ribosomal protein S10p/S20e family... 0.08 Orthogroups_2024-Update
PSME_00047252-RA No alias (at3g47370 : 204.0) Ribosomal protein S10p/S20e family... 0.12 Orthogroups_2024-Update
Potri.012G128300 No alias Ribosomal protein S10p/S20e family protein 0.17 Orthogroups_2024-Update
Potri.015G129800 No alias Ribosomal protein S10p/S20e family protein 0.07 Orthogroups_2024-Update
Pp1s257_105V6 No alias 40s ribosomal protein 0.25 Orthogroups_2024-Update
Pp1s271_9V6 No alias 40s ribosomal protein 0.2 Orthogroups_2024-Update
Seita.4G023300.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Seita.9G468800.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Sobic.001G436200.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.32 Orthogroups_2024-Update
Sobic.010G023900.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Solyc01g096580 No alias ribosomal protein S10p/S20e family protein 0.32 Orthogroups_2024-Update
Solyc01g096590 No alias ribosomal protein S10p/S20e family protein 0.23 Orthogroups_2024-Update
Sopen00g005650 No alias Ribosomal protein S10p/S20e 0.1 Orthogroups_2024-Update
Sopen00g005660 No alias Ribosomal protein S10p/S20e 0.28 Orthogroups_2024-Update
Sopen01g040310 No alias Ribosomal protein S10p/S20e 0.1 Orthogroups_2024-Update
Sopen01g040320 No alias Ribosomal protein S10p/S20e 0.48 Orthogroups_2024-Update
evm.model.contig_560.7 No alias (at3g47370 : 151.0) Ribosomal protein S10p/S20e family... 0.38 Orthogroups_2024-Update
evm.model.tig00000842.28 No alias (p35686|rs20_orysa : 147.0) 40S ribosomal protein S20 -... 0.25 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 25 119
No external refs found!