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  5. Brara.C01481.1

Brara.C01481.1


Description : pre-mRNA splicing factor *(SF1)


Gene families : OG_42_0002621 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002621_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C01481.1
Cluster HCAA Clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
77639 No alias splicing factor-related 0.02 Orthogroups_2024-Update
A4A49_19792 No alias kh domain-containing protein 0.02 Orthogroups_2024-Update
MA_15045g0010 No alias (at5g51300 : 679.0) splicing factor-related; FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00023166-RA No alias (at5g51300 : 615.0) splicing factor-related; FUNCTIONS... 0.02 Orthogroups_2024-Update
Sopen03g024150 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 448 517
IPR004088 KH_dom_type_1 223 294
IPR032570 SF1-HH 93 204
No external refs found!