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  5. Brara.C01504.1

Brara.C01504.1


Description : chaperone component *(ClpC) of chloroplast Clp-type protease complex


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Brassica rapa: Brara.C01504.1
Cluster HCAA Clusters: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
174539 No alias casein lytic proteinase B3 0.02 Orthogroups_2024-Update
Bradi4g39880 No alias CLPC homologue 1 0.03 Orthogroups_2024-Update
Brara.B00602.1 No alias organellar chaperone *(Clp-p/Clp-m) 0.03 Orthogroups_2024-Update
Cre11.g467644 No alias heat shock protein 101 0.02 Orthogroups_2024-Update
HORVU4Hr1G090440.2 No alias organellar chaperone *(Clp-p/Clp-m) 0.04 Orthogroups_2024-Update
Mp3g09010.1 No alias organellar chaperone (Clp-p|Clp-m) 0.02 Orthogroups_2024-Update
PSME_00000131-RA No alias (at5g50920 : 1361.0) Encodes a protein that is similar... 0.02 Orthogroups_2024-Update
Seita.3G175700.1 No alias cytosolic chaperone *(Hsp101) 0.04 Orthogroups_2024-Update
Sopen02g033340 No alias AAA domain (Cdc48 subfamily) 0.04 Orthogroups_2024-Update
evm.model.tig00020563.86 No alias (at5g50920 : 990.0) Encodes a protein that is similar to... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
MF GO:0016887 ATPase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004476 mannose-6-phosphate isomerase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016681 oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0070402 NADPH binding IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 299 415
IPR004176 Clp_N 109 161
IPR004176 Clp_N 185 236
IPR003959 ATPase_AAA_core 636 810
IPR019489 Clp_ATPase_C 817 897
No external refs found!