Description : component *(SF3B7) of splicing factor 3B complex
Gene families : OG_42_0003979 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003979_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.C01523.1 | |
Cluster | HCAA Clusters: Cluster_136 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Glyma.18G061500 | No alias | PHF5-like protein | 0.04 | Orthogroups_2024-Update | |
Mp8g14050.1 | No alias | pre-mRNA splicing factor (PHF5) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000398 | mRNA splicing, via spliceosome | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
MF | GO:0004559 | alpha-mannosidase activity | IEP | Predicted GO |
MF | GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | IEP | Predicted GO |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | Predicted GO |
BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Predicted GO |
MF | GO:0015923 | mannosidase activity | IEP | Predicted GO |
MF | GO:0015924 | mannosyl-oligosaccharide mannosidase activity | IEP | Predicted GO |
MF | GO:0016887 | ATPase activity | IEP | Predicted GO |
CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | Predicted GO |
CC | GO:0033179 | proton-transporting V-type ATPase, V0 domain | IEP | Predicted GO |
BP | GO:0036260 | RNA capping | IEP | Predicted GO |
MF | GO:0036442 | proton-exporting ATPase activity | IEP | Predicted GO |
MF | GO:0046961 | proton-transporting ATPase activity, rotational mechanism | IEP | Predicted GO |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005345 | PHF5 | 1 | 104 |
No external refs found! |