1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.C01564.1

Brara.C01564.1


Description : phototropin signalling factor *(RPT2)


Gene families : OG_42_0000067 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C01564.1
Cluster HCAA Clusters: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
A4A49_15521 No alias root phototropism protein 3 0.05 Orthogroups_2024-Update
A4A49_18800 No alias btbpoz domain-containing protein 0.03 Orthogroups_2024-Update
A4A49_24985 No alias root phototropism protein 2 0.06 Orthogroups_2024-Update
At2g30520 No alias Root phototropism protein 2... 0.09 Orthogroups_2024-Update
At5g67440 No alias BTB/POZ domain-containing protein NPY3... 0.06 Orthogroups_2024-Update
Bradi1g70761 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Bradi3g46480 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Bradi4g25900 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Brara.F02310.1 No alias substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
GRMZM2G004523 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
GRMZM2G353024 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.02G153500 No alias Phototropic-responsive NPH3 family protein 0.05 Orthogroups_2024-Update
Glyma.08G281700 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.10G020800 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Glyma.11G049800 No alias Phototropic-responsive NPH3 family protein 0.06 Orthogroups_2024-Update
Glyma.11G200201 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Glyma.13G221200 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.17G161500 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Glyma.17G163500 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Glyma.19G207900 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G023260.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G015480.1 No alias substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
HORVU7Hr1G073650.1 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.04 Orthogroups_2024-Update
LOC_Os03g10880 No alias BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain... 0.02 Orthogroups_2024-Update
LOC_Os11g02610 No alias BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
LOC_Os11g02620 No alias BTBN21 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
MA_15614g0010 No alias (at1g67900 : 556.0) Phototropic-responsive NPH3 family... 0.03 Orthogroups_2024-Update
Mp4g20760.1 No alias BTB/POZ domain-containing protein At1g30440... 0.03 Orthogroups_2024-Update
Mp5g07060.1 No alias BTB/POZ domain-containing protein At5g48800... 0.02 Orthogroups_2024-Update
Potri.005G130700 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Potri.010G046800 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Potri.013G159000 No alias Phototropic-responsive NPH3 family protein 0.06 Orthogroups_2024-Update
Potri.017G048200 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Potri.019G131600 No alias Phototropic-responsive NPH3 family protein 0.06 Orthogroups_2024-Update
Pp1s67_83V6 No alias protein binding 0.07 Orthogroups_2024-Update
Seita.7G303000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G012100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G099400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.005G015200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.008G026800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc01g107180 No alias Phototropic-responsive NPH3 family protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc05g013570 No alias Phototropic-responsive NPH3 family protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc05g051580 No alias Phototropic-responsive NPH3 family protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc07g043130 No alias Phototropic-responsive NPH3 family protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc11g066730 No alias phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Sopen01g048130 No alias NPH3 family 0.02 Orthogroups_2024-Update
Sopen02g037130 No alias NPH3 family 0.05 Orthogroups_2024-Update
Sopen05g008470 No alias NPH3 family 0.03 Orthogroups_2024-Update
Sopen05g030030 No alias NPH3 family 0.05 Orthogroups_2024-Update
Sopen06g002790 No alias NPH3 family 0.03 Orthogroups_2024-Update
Sopen08g002830 No alias NPH3 family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 29 117
IPR027356 NPH3_dom 187 435
No external refs found!