Brara.C01612.1

Description : component *(uS3) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.C01612.1
Cluster	HCAA Clusters: Cluster_118

Target	Alias	Description	ECC score	Gene Family Method
270414	No alias	Ribosomal protein S3 family protein	0.04	Orthogroups_2024-Update
438700	No alias	Ribosomal protein S3 family protein	0.03	Orthogroups_2024-Update
A4A49_00336	No alias	40s ribosomal protein s3-3	0.06	Orthogroups_2024-Update
At2g31610	No alias	40S ribosomal protein S3-1...	0.04	Orthogroups_2024-Update
At5g35530	No alias	40S ribosomal protein S3-3...	0.05	Orthogroups_2024-Update
Bradi3g16150	No alias	Ribosomal protein S3 family protein	0.08	Orthogroups_2024-Update
Cre02.g102250	No alias	Ribosomal protein S3 family protein	0.06	Orthogroups_2024-Update
GRMZM2G074300	No alias	Ribosomal protein S3 family protein	0.06	Orthogroups_2024-Update
Glyma.09G156600	No alias	Ribosomal protein S3 family protein	0.03	Orthogroups_2024-Update
Glyma.10G133100	No alias	Ribosomal protein S3 family protein	0.05	Orthogroups_2024-Update
Glyma.16G207300	No alias	Ribosomal protein S3 family protein	0.04	Orthogroups_2024-Update
Glyma.16G207400	No alias	Ribosomal protein S3 family protein	0.06	Orthogroups_2024-Update
Glyma.20G083300	No alias	Ribosomal protein S3 family protein	0.06	Orthogroups_2024-Update
MA_10436283g0010	No alias	(at5g35530 : 397.0) Ribosomal protein S3 family protein;...	0.04	Orthogroups_2024-Update
Mp1g16730.1	No alias	component RPS3 of SSU proteome	0.1	Orthogroups_2024-Update
PSME_00007401-RA	No alias	(at5g35530 : 366.0) Ribosomal protein S3 family protein;...	0.07	Orthogroups_2024-Update
PSME_00040312-RA	No alias	(at5g35530 : 390.0) Ribosomal protein S3 family protein;...	0.07	Orthogroups_2024-Update
Potri.006G222100	No alias	Ribosomal protein S3 family protein	0.09	Orthogroups_2024-Update
Potri.018G049100	No alias	Ribosomal protein S3 family protein	0.03	Orthogroups_2024-Update
Pp1s127_74V6	No alias	40s ribosomal protein	0.1	Orthogroups_2024-Update
Pp1s136_175V6	No alias	40s ribosomal protein	0.03	Orthogroups_2024-Update
Pp1s29_222V6	No alias	40s ribosomal protein	0.19	Orthogroups_2024-Update
Pp1s31_178V6	No alias	40s ribosomal protein	0.09	Orthogroups_2024-Update
Pp1s41_146V6	No alias	40s ribosomal protein	0.12	Orthogroups_2024-Update
Pp1s454_3V6	No alias	40s ribosomal protein	0.16	Orthogroups_2024-Update
Seita.2G385700.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Seita.6G050300.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Sobic.002G371100.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Sobic.007G053300.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Solyc07g041310	No alias	Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1)	0.14	Orthogroups_2024-Update
Solyc08g061850	No alias	Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1)	0.1	Orthogroups_2024-Update
Solyc08g061960	No alias	Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1)	0.12	Orthogroups_2024-Update
Sopen07g020630	No alias	Ribosomal protein S3, C-terminal domain	0.18	Orthogroups_2024-Update
Sopen08g017410	No alias	Ribosomal protein S3, C-terminal domain	0.09	Orthogroups_2024-Update
Sopen08g017480	No alias	Ribosomal protein S3, C-terminal domain	0.13	Orthogroups_2024-Update
evm.model.contig_2149.7	No alias	(at5g35530 : 302.0) Ribosomal protein S3 family protein;...	0.18	Orthogroups_2024-Update
evm.model.tig00021462.41	No alias	(at2g31610 : 358.0) Ribosomal protein S3 family protein;...	0.14	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	16Dec
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Predicted GO
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	Predicted GO
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	Predicted GO
MF	GO:0004637	phosphoribosylamine-glycine ligase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004819	glutamine-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Predicted GO
MF	GO:0005347	ATP transmembrane transporter activity	IEP	Predicted GO
MF	GO:0005471	ATP:ADP antiporter activity	IEP	Predicted GO
CC	GO:0005575	cellular_component	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006144	purine nucleobase metabolic process	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006425	glutaminyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006553	lysine metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006862	nucleotide transport	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0008837	diaminopimelate epimerase activity	IEP	Predicted GO
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predicted GO
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009085	lysine biosynthetic process	IEP	Predicted GO
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Predicted GO
BP	GO:0009112	nucleobase metabolic process	IEP	Predicted GO
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	Predicted GO
CC	GO:0009317	acetyl-CoA carboxylase complex	IEP	Predicted GO
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015217	ADP transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015238	drug transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015301	anion:anion antiporter activity	IEP	Predicted GO
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015748	organophosphate ester transport	IEP	Predicted GO
BP	GO:0016053	organic acid biosynthetic process	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016421	CoA carboxylase activity	IEP	Predicted GO
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Predicted GO
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Predicted GO
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predicted GO
MF	GO:0016854	racemase and epimerase activity	IEP	Predicted GO
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0032991	protein-containing complex	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	Predicted GO
BP	GO:0042440	pigment metabolic process	IEP	Predicted GO
MF	GO:0042586	peptide deformylase activity	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0044283	small molecule biosynthetic process	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
BP	GO:0046112	nucleobase biosynthetic process	IEP	Predicted GO
BP	GO:0046148	pigment biosynthetic process	IEP	Predicted GO
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Predicted GO
BP	GO:0046451	diaminopimelate metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0047661	amino-acid racemase activity	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0099516	ion antiporter activity	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001351	Ribosomal_S3_C	106	188
IPR004044	KH_dom_type_2	20	93

External Links

No external refs found!

Brara.C01612.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation