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  5. Brara.C01656.1

Brara.C01656.1


Description : Unknown function


Gene families : OG_42_0009572 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009572_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C01656.1
Cluster HCAA Clusters: Cluster_377

Target Alias Description ECC score Gene Family Method Actions
Glyma.20G081700 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000782 telomere cap complex IEP Predicted GO
CC GO:0000783 nuclear telomere cap complex IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
CC GO:0005795 Golgi stack IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
CC GO:0031984 organelle subcompartment IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0098791 Golgi subcompartment IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
CC GO:1990879 CST complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 519 551
IPR002885 Pentatricopeptide_repeat 231 293
IPR002885 Pentatricopeptide_repeat 145 170
IPR002885 Pentatricopeptide_repeat 314 362
IPR002885 Pentatricopeptide_repeat 559 605
IPR002885 Pentatricopeptide_repeat 386 429
IPR002885 Pentatricopeptide_repeat 454 502
No external refs found!