Brara.C01744.1

Description : component *(eL20) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001510 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001510_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.C01744.1
Cluster	HCAA Clusters: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
227198	No alias	Ribosomal protein L18ae/LX family protein	0.13	Orthogroups_2024-Update
A4A49_41727	No alias	60s ribosomal protein l18a	0.12	Orthogroups_2024-Update
A4A49_56604	No alias	60s ribosomal protein l18a	0.11	Orthogroups_2024-Update
At2g34480	No alias	Ribosomal protein L18ae/LX family protein...	0.05	Orthogroups_2024-Update
Bradi2g16430	No alias	Ribosomal protein L18ae/LX family protein	0.22	Orthogroups_2024-Update
Bradi2g46010	No alias	Ribosomal protein L18ae/LX family protein	0.17	Orthogroups_2024-Update
Bradi2g50020	No alias	Ribosomal protein L18ae/LX family protein	0.07	Orthogroups_2024-Update
Brara.C03533.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Cre01.g047750	No alias	Ribosomal protein L18ae/LX family protein	0.17	Orthogroups_2024-Update
GRMZM2G022619	No alias	Ribosomal protein L18ae/LX family protein	0.15	Orthogroups_2024-Update
Glyma.02G284900	No alias	Ribosomal protein L18ae/LX family protein	0.03	Orthogroups_2024-Update
Glyma.13G217100	No alias	Ribosomal protein L18ae/LX family protein	0.03	Orthogroups_2024-Update
Glyma.14G029901	No alias	Ribosomal protein L18ae/LX family protein	0.1	Orthogroups_2024-Update
Glyma.15G095400	No alias	Ribosomal protein L18ae/LX family protein	0.08	Orthogroups_2024-Update
HORVU1Hr1G088040.2	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
HORVU3Hr1G060800.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Kfl00905_0040	kfl00905_0040_v1.1	(at2g34480 : 295.0) Ribosomal protein L18ae/LX family...	0.03	Orthogroups_2024-Update
LOC_Os01g47660	No alias	60S ribosomal protein L18a, putative, expressed	0.06	Orthogroups_2024-Update
LOC_Os01g54870	No alias	60S ribosomal protein L18a, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os05g49030	No alias	60S ribosomal protein L18a, putative, expressed	0.06	Orthogroups_2024-Update
MA_12029g0010	No alias	(q943f3\|rl18a_orysa : 339.0) 60S ribosomal protein L18a...	0.07	Orthogroups_2024-Update
Mp1g17730.1	No alias	component RPL18a of LSU proteome component	0.13	Orthogroups_2024-Update
PSME_00023758-RA	No alias	(q943f3\|rl18a_orysa : 335.0) 60S ribosomal protein L18a...	0.09	Orthogroups_2024-Update
Potri.002G057600	No alias	Ribosomal protein L18ae/LX family protein	0.13	Orthogroups_2024-Update
Potri.004G063400	No alias	Ribosomal protein L18ae/LX family protein	0.05	Orthogroups_2024-Update
Pp1s184_111V6	No alias	60s ribosomal protein l18a	0.23	Orthogroups_2024-Update
Pp1s44_13V6	No alias	60s ribosomal protein l18a	0.1	Orthogroups_2024-Update
Pp1s56_243V6	No alias	60s ribosomal protein l18a	0.08	Orthogroups_2024-Update
Pp1s74_193V6	No alias	60s ribosomal protein l18a	0.26	Orthogroups_2024-Update
Seita.3G145500.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
Seita.5G262600.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Seita.8G085600.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Sobic.003G249700.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
Sobic.005G091700.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
Sobic.009G233400.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.26	Orthogroups_2024-Update
Solyc02g070640	No alias	60S ribosomal protein L18a (AHRD V3.3 *** Q3HRW8_SOLTU)	0.29	Orthogroups_2024-Update
Solyc02g070650	No alias	60S ribosomal protein L18a (AHRD V3.3 *** Q3HRW8_SOLTU)	0.24	Orthogroups_2024-Update
Solyc06g065590	No alias	60S ribosomal protein L18a (AHRD V3.3 *** K4C7I8_SOLLC)	0.11	Orthogroups_2024-Update
Solyc08g016180	No alias	60S ribosomal protein L18a (AHRD V3.3 *** K4CJE2_SOLLC)	0.26	Orthogroups_2024-Update
Sopen02g019720	No alias	Ribosomal L18ae/LX protein domain	0.05	Orthogroups_2024-Update
Sopen02g019730	No alias	Ribosomal L18ae/LX protein domain	0.13	Orthogroups_2024-Update
Sopen06g024090	No alias	Ribosomal L18ae/LX protein domain	0.11	Orthogroups_2024-Update
Sopen08g006530	No alias	Ribosomal L18ae/LX protein domain	0.31	Orthogroups_2024-Update
evm.model.contig_448.2	No alias	(q943f3\|rl18a_orysa : 186.0) 60S ribosomal protein L18a...	0.29	Orthogroups_2024-Update
evm.model.tig00000615.59	No alias	(at1g29970 : 221.0) 60S ribosomal protein L18A-1;...	0.2	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004017	adenylate kinase activity	IEP	Predicted GO
MF	GO:0004637	phosphoribosylamine-glycine ligase activity	IEP	Predicted GO
BP	GO:0006144	purine nucleobase metabolic process	IEP	Predicted GO
BP	GO:0009112	nucleobase metabolic process	IEP	Predicted GO
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
BP	GO:0042440	pigment metabolic process	IEP	Predicted GO
BP	GO:0046112	nucleobase biosynthetic process	IEP	Predicted GO
BP	GO:0046148	pigment biosynthetic process	IEP	Predicted GO
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR023573	Ribosomal_L18a//L18Ae/LX	7	128

External Links

No external refs found!

Brara.C01744.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation