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  5. Brara.C01872.1

Brara.C01872.1


Description : component *(uS7) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002111 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C01872.1
Cluster HCAA Clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
164593 No alias ribosomal protein 5A 0.09 Orthogroups_2024-Update
271466 No alias ribosomal protein 5B 0.04 Orthogroups_2024-Update
A4A49_35794 No alias 40s ribosomal protein s5-2 0.07 Orthogroups_2024-Update
At2g37270 No alias 40S ribosomal protein S5-1... 0.04 Orthogroups_2024-Update
Bradi2g03760 No alias ribosomal protein 5A 0.16 Orthogroups_2024-Update
Bradi4g41050 No alias ribosomal protein 5B 0.13 Orthogroups_2024-Update
Brara.A03377.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Brara.C03392.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Brara.D02263.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.E00779.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Cre06.g290950 No alias ribosomal protein 5B 0.2 Orthogroups_2024-Update
GRMZM2G078985 No alias ribosomal protein 5A 0.16 Orthogroups_2024-Update
Glyma.02G167900 No alias ribosomal protein 5B 0.07 Orthogroups_2024-Update
Glyma.09G103400 No alias ribosomal protein 5B 0.18 Orthogroups_2024-Update
Glyma.12G201900 No alias ribosomal protein 5B 0.08 Orthogroups_2024-Update
Glyma.13G300300 No alias ribosomal protein 5B 0.09 Orthogroups_2024-Update
HORVU3Hr1G015190.2 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Kfl00737_0010 kfl00737_0010_v1.1 (o65731|rs5_cicar : 338.0) 40S ribosomal protein S5... 0.09 Orthogroups_2024-Update
MA_10428487g0010 No alias (at2g37270 : 350.0) One of two genes encoding the... 0.06 Orthogroups_2024-Update
Mp3g10570.1 No alias component RPS5 of SSU proteome 0.11 Orthogroups_2024-Update
Potri.006G197700 No alias ribosomal protein 5B 0.04 Orthogroups_2024-Update
Pp1s10_385V6 No alias 40s ribosomal protein s5 0.21 Orthogroups_2024-Update
Pp1s114_143V6 No alias 40s ribosomal protein s5 0.04 Orthogroups_2024-Update
Seita.5G065000.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Seita.8G114300.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Sobic.003G109600.2 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Solyc10g078620 No alias Ribosomal protein S5/S7 (AHRD V3.3 *** A0A103XH68_CYNCS) 0.25 Orthogroups_2024-Update
Solyc11g042610 No alias Ribosomal protein S5/S7 (AHRD V3.3 *** A0A103XH68_CYNCS) 0.15 Orthogroups_2024-Update
Sopen10g029250 No alias Ribosomal protein S7p/S5e 0.22 Orthogroups_2024-Update
Sopen11g018760 No alias Ribosomal protein S7p/S5e 0.07 Orthogroups_2024-Update
evm.model.contig_670.1 No alias (o65731|rs5_cicar : 298.0) 40S ribosomal protein S5... 0.28 Orthogroups_2024-Update
evm.model.tig00021332.10 No alias (o65731|rs5_cicar : 303.0) 40S ribosomal protein S5... 0.19 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR023798 Ribosomal_S7_dom 61 207
No external refs found!