Brara.C01888.1

Description : transcription factor *(DOF)

Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.C01888.1
Cluster	HCAA Clusters: Cluster_265

Target	Alias	Description	ECC score	Gene Family Method
A4A49_12086	No alias	cyclic dof factor 2	0.04	Orthogroups_2024-Update
At2g34140	No alias	Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]	0.03	Orthogroups_2024-Update
At2g46590	No alias	Dof zinc finger protein DOF2.5...	0.03	Orthogroups_2024-Update
At4g38000	No alias	DOF4.7 [Source:UniProtKB/TrEMBL;Acc:A0A178V5K8]	0.03	Orthogroups_2024-Update
Bradi1g26570	No alias	TARGET OF MONOPTEROS 6	0.03	Orthogroups_2024-Update
Bradi3g25670	No alias	cycling DOF factor 1	0.03	Orthogroups_2024-Update
Bradi4g04260	No alias	OBF-binding protein 3	0.02	Orthogroups_2024-Update
Bradi5g18640	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Brara.C04315.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Brara.F01753.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
GRMZM2G089949	No alias	cycling DOF factor 2	0.03	Orthogroups_2024-Update
GRMZM2G327189	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Glyma.04G168300	No alias	cycling DOF factor 3	0.03	Orthogroups_2024-Update
Glyma.06G124300	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Orthogroups_2024-Update
Glyma.07G012100	No alias	DOF zinc finger protein 1	0.04	Orthogroups_2024-Update
Glyma.07G198900	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Glyma.17G089300	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
HORVU3Hr1G116260.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
HORVU5Hr1G113220.6	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
LOC_Os10g26620	No alias	dof zinc finger domain containing protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_175298g0010	No alias	(at5g39660 : 214.0) Dof-type zinc finger...	0.03	Orthogroups_2024-Update
PSME_00041316-RA	No alias	(at5g39660 : 139.0) Dof-type zinc finger...	0.02	Orthogroups_2024-Update
Seita.3G371900.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
Seita.9G259300.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
Seita.9G525000.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Sobic.001G420300.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Solyc02g065290	No alias	Dof zinc finger protein2	0.02	Orthogroups_2024-Update
Solyc02g090310	No alias	Dof zinc finger protein (AHRD V3.3 - W9QGW0_9ROSA)	0.03	Orthogroups_2024-Update
Solyc03g112930	No alias	Dof zinc finger protein (AHRD V3.3 *** A0A0B6VJP1_TOBAC)	0.02	Orthogroups_2024-Update
Solyc04g070960	No alias	Dof zinc finger protein (AHRD V3.3 - W9S6D3_9ROSA)	0.03	Orthogroups_2024-Update
Sopen02g035000	No alias	Dof domain, zinc finger	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Predicted GO
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0004089	carbonate dehydratase activity	IEP	Predicted GO
BP	GO:0006259	DNA metabolic process	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006308	DNA catabolic process	IEP	Predicted GO
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Predicted GO
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Predicted GO
MF	GO:0016759	cellulose synthase activity	IEP	Predicted GO
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Predicted GO
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0019208	phosphatase regulator activity	IEP	Predicted GO
MF	GO:0019888	protein phosphatase regulator activity	IEP	Predicted GO
BP	GO:0030243	cellulose metabolic process	IEP	Predicted GO
BP	GO:0030244	cellulose biosynthetic process	IEP	Predicted GO
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Predicted GO
BP	GO:0051259	protein complex oligomerization	IEP	Predicted GO
BP	GO:0051260	protein homooligomerization	IEP	Predicted GO
CC	GO:1903293	phosphatase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	70	125

External Links

No external refs found!

Brara.C01888.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation