1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.C02007.1

Brara.C02007.1


Description : component *(UPF2) of RNA quality control Exon Junction complex


Gene families : OG_42_0004320 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004320_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02007.1
Cluster HCAA Clusters: Cluster_255


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006897 endocytosis IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007051 spindle organization IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051225 spindle assembly IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
CC GO:0070652 HAUS complex IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0098657 import into cell IEP Predicted GO
InterPro domains Description Start Stop
IPR007193 Upf2/Nmd2_C 978 1110
IPR003890 MIF4G-like_typ-3 462 648
IPR003890 MIF4G-like_typ-3 666 864
No external refs found!