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  5. Brara.C02025.1

Brara.C02025.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02025.1
Cluster HCAA Clusters: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
Brara.H03119.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
MA_10425823g0010 No alias (q852a1|expa7_orysa : 372.0) Expansin-A7 precursor... 0.03 Orthogroups_2024-Update
PSME_00006590-RA No alias (at2g40610 : 387.0) member of Alpha-Expansin Gene... 0.06 Orthogroups_2024-Update
PSME_00040125-RA No alias (q40636|expa2_orysa : 389.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
Potri.019G057500 No alias expansin A8 0.02 Orthogroups_2024-Update
Pp1s191_40V6 No alias alpha expansin xpa5 0.03 Orthogroups_2024-Update
Pp1s223_38V6 No alias alpha expansin xpa5 0.02 Orthogroups_2024-Update
Solyc05g007830 No alias expansin12 0.02 Orthogroups_2024-Update
Solyc10g086520 No alias expansin 6 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 67 154
IPR007117 Expansin_CBD 165 242
No external refs found!