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  5. Brara.C02080.1

Brara.C02080.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02080.1
Cluster HCAA Clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
A4A49_33199 No alias expansin-a15 0.04 Orthogroups_2024-Update
At1g69530 No alias AT1G69530 protein [Source:UniProtKB/TrEMBL;Acc:C0Z241] 0.03 Orthogroups_2024-Update
Bradi1g61190 No alias expansin A15 0.02 Orthogroups_2024-Update
Glyma.06G143300 No alias expansin A8 0.03 Orthogroups_2024-Update
Glyma.20G033900 No alias expansin A15 0.04 Orthogroups_2024-Update
LOC_Os02g51040 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g21820 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_30127g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
Potri.001G240900 No alias expansin A4 0.04 Orthogroups_2024-Update
Potri.004G123200 No alias expansin A1 0.03 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G108000 No alias expansin A8 0.03 Orthogroups_2024-Update
Potri.013G060800 No alias expansin A15 0.04 Orthogroups_2024-Update
Pp1s223_38V6 No alias alpha expansin xpa5 0.03 Orthogroups_2024-Update
Pp1s325_11V6 No alias expa6 gene for putative alpha expansin protein family EXPA6 0.03 Orthogroups_2024-Update
Sobic.003G338801.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Solyc06g049050 No alias expansin 2 0.04 Orthogroups_2024-Update
Sopen03g034870 No alias Pollen allergen 0.05 Orthogroups_2024-Update
Sopen06g015410 No alias Pollen allergen 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 165 243
IPR009009 RlpA-like_DPBB 69 154
No external refs found!