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  5. Brara.C02146.1

Brara.C02146.1


Description : E3 ubiquitin ligase *(RMA/MUSE)


Gene families : OG_42_0000548 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000548_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02146.1
Cluster HCAA Clusters: Cluster_349

Target Alias Description ECC score Gene Family Method Actions
Bradi2g50940 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G112000 No alias RING membrane-anchor 1 0.02 Orthogroups_2024-Update
Glyma.13G179900 No alias RING membrane-anchor 1 0.03 Orthogroups_2024-Update
Potri.001G401600 No alias RING membrane-anchor 3 0.03 Orthogroups_2024-Update
Pp1s72_212V6 No alias zinc c3hc4 type family protein 0.03 Orthogroups_2024-Update
Seita.7G053100.1 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.02 Orthogroups_2024-Update
Sobic.004G228100.2 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.02 Orthogroups_2024-Update
Solyc07g054080 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT1G19310.1) 0.04 Orthogroups_2024-Update
Sopen12g005320 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004512 inositol-3-phosphate synthase activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006021 inositol biosynthetic process IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!