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  5. Brara.C02225.1

Brara.C02225.1


Description : pectin lyase & EC_3.2 glycosylase


Gene families : OG_42_0000512 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000512_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02225.1
Cluster HCAA Clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
A4A49_10908 No alias polygalacturonase 0.04 Orthogroups_2024-Update
At2g15470 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
At3g07820 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
At4g18180 No alias Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G18180] 0.03 Orthogroups_2024-Update
Bradi1g40990 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.D02006.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Brara.F01203.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.G00223.1 No alias pectin lyase & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Glyma.04G157600 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G006100 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.007G035800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G218200.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.4G218300.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.5G182200.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.9G141800.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sobic.010G161400.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Solyc07g056290 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G78400.1) 0.04 Orthogroups_2024-Update
Solyc10g047590 No alias Pectin lyase-like superfamily protein, putative (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 64 389
No external refs found!