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  5. Brara.C02522.1

Brara.C02522.1


Description : substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)


Gene families : OG_42_0000339 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000339_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02522.1
Cluster HCAA Clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Pp1s196_87V6 No alias f-box family protein 0.02 Orthogroups_2024-Update
Seita.1G327500.1 No alias substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB) 0.04 Orthogroups_2024-Update
Seita.9G457300.1 No alias component *(COI) of jasmonic acid receptor complex 0.03 Orthogroups_2024-Update
Seita.9G512800.1 No alias substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB) 0.02 Orthogroups_2024-Update
Sopen04g029930 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
BP GO:0046434 organophosphate catabolic process IEP Predicted GO
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Predicted GO
BP GO:0046855 inositol phosphate dephosphorylation IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0071545 inositol phosphate catabolic process IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!