Brara.C02851.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02851.1
Cluster HCAA Clusters: Cluster_405

Target Alias Description ECC score Gene Family Method Actions
A4A49_04302 No alias expansin-a10 0.03 Orthogroups_2024-Update
A4A49_38718 No alias expansin-a7 0.03 Orthogroups_2024-Update
A4A49_64370 No alias expansin-a1 0.03 Orthogroups_2024-Update
At4g01630 No alias EXPA17 [Source:UniProtKB/TrEMBL;Acc:A0A178UWZ2] 0.07 Orthogroups_2024-Update
At5g05290 No alias Expansin-A2 [Source:UniProtKB/Swiss-Prot;Acc:Q38866] 0.03 Orthogroups_2024-Update
At5g39310 No alias Expansin-A24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL76] 0.04 Orthogroups_2024-Update
Bradi2g53580 No alias expansin A8 0.02 Orthogroups_2024-Update
Bradi3g09950 No alias expansin 11 0.02 Orthogroups_2024-Update
Bradi3g59460 No alias expansin A1 0.03 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.03 Orthogroups_2024-Update
Brara.H03119.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
GRMZM2G105844 No alias expansin A1 0.03 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.03 Orthogroups_2024-Update
LOC_Os04g15840 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g50400 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10377235g0010 No alias (at2g40610 : 412.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Mp1g22730.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp3g09760.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Potri.005G244100 No alias expansin 11 0.03 Orthogroups_2024-Update
Potri.006G108000 No alias expansin A8 0.04 Orthogroups_2024-Update
Seita.6G086200.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Seita.9G342900.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.001G033300.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G121900.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.004G238801.1 No alias alpha-class expansin 0.01 Orthogroups_2024-Update
Solyc07g063210 No alias Expansin (AHRD V3.3 *** G4XZZ0_9GENT) 0.03 Orthogroups_2024-Update
Sopen02g032810 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 162 240
IPR009009 RlpA-like_DPBB 63 151
No external refs found!