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  5. Brara.C02960.1

Brara.C02960.1


Description : calcium-permeable channel *(OSCA)


Gene families : OG_42_0000192 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000192_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02960.1
Cluster HCAA Clusters: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
139283 No alias hypothetical protein 1 0.02 Orthogroups_2024-Update
At1g32090 No alias Hyperosmolality-gated Ca2+ permeable channel 1.8... 0.03 Orthogroups_2024-Update
Bradi1g12670 No alias lipases;hydrolases, acting on ester bonds 0.03 Orthogroups_2024-Update
Bradi1g58380 No alias Early-responsive to dehydration stress protein (ERD4) 0.02 Orthogroups_2024-Update
Bradi2g60810 No alias Early-responsive to dehydration stress protein (ERD4) 0.03 Orthogroups_2024-Update
Brara.E03610.1 No alias calcium-permeable channel *(OSCA) 0.03 Orthogroups_2024-Update
Glyma.09G211000 No alias early-responsive to dehydration stress protein (ERD4) 0.03 Orthogroups_2024-Update
Mp7g04480.1 No alias calcium-permeable channel (OSCA) 0.02 Orthogroups_2024-Update
Potri.003G200900 No alias Early-responsive to dehydration stress protein (ERD4) 0.02 Orthogroups_2024-Update
Pp1s322_34V6 No alias early-responsive to dehydration erd 0.02 Orthogroups_2024-Update
Sobic.001G282700.1 No alias calcium-permeable channel *(OSCA) 0.02 Orthogroups_2024-Update
Sopen09g026510 No alias Domain of unknown function DUF221 0.04 Orthogroups_2024-Update
Sopen12g030230 No alias Domain of unknown function DUF221 0.04 Orthogroups_2024-Update
evm.model.contig_4432.3 No alias (at1g32090 : 103.0) early-responsive to dehydration... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006658 phosphatidylserine metabolic process IEP Predicted GO
BP GO:0006659 phosphatidylserine biosynthetic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Predicted GO
BP GO:0046855 inositol phosphate dephosphorylation IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0071545 inositol phosphate catabolic process IEP Predicted GO
CC GO:0072546 ER membrane protein complex IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR027815 PHM7_cyt 188 342
IPR003864 RSN1_7TM 356 620
IPR032880 Csc1_N 6 166
No external refs found!