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  5. Brara.C02994.1

Brara.C02994.1


Description : AS2/LOB-type transcription factor


Gene families : OG_42_0000544 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000544_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02994.1
Cluster HCAA Clusters: Cluster_313

Target Alias Description ECC score Gene Family Method Actions
Brara.I00847.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Mp3g12980.1 No alias transcription factor (AS2/LOB) 0.02 Orthogroups_2024-Update
PSME_00026677-RA No alias (at1g67100 : 203.0) LOB domain-containing protein 40... 0.02 Orthogroups_2024-Update
PSME_00054858-RA No alias (at1g67100 : 186.0) LOB domain-containing protein 40... 0.02 Orthogroups_2024-Update
Potri.005G145500 No alias LOB domain-containing protein 38 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 4 104
No external refs found!