Brara.C02996.1


Description : component *(eS7) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002228 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002228_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02996.1
Cluster HCAA Clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
148446 No alias Ribosomal protein S7e family protein 0.13 Orthogroups_2024-Update
A4A49_59553 No alias 40s ribosomal protein s7-1 0.09 Orthogroups_2024-Update
At1g48830 No alias 40S ribosomal protein S7 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF0] 0.06 Orthogroups_2024-Update
Bradi1g65150 No alias Ribosomal protein S7e family protein 0.3 Orthogroups_2024-Update
Bradi3g23310 No alias Ribosomal protein S7e family protein 0.22 Orthogroups_2024-Update
Brara.B00641.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Brara.C00708.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Cre12.g498900 No alias Ribosomal protein S7e family protein 0.26 Orthogroups_2024-Update
GRMZM2G030016 No alias Ribosomal protein S7e family protein 0.05 Orthogroups_2024-Update
Glyma.05G238000 No alias Ribosomal protein S7e family protein 0.17 Orthogroups_2024-Update
Glyma.07G092900 No alias Ribosomal protein S7e family protein 0.12 Orthogroups_2024-Update
Glyma.08G045100 No alias Ribosomal protein S7e family protein 0.23 Orthogroups_2024-Update
Glyma.09G183300 No alias Ribosomal protein S7e family protein 0.22 Orthogroups_2024-Update
Glyma.13G045800 No alias Ribosomal protein S7e family protein 0.07 Orthogroups_2024-Update
Glyma.19G049200 No alias Ribosomal protein S7e family protein 0.24 Orthogroups_2024-Update
HORVU1Hr1G029870.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
HORVU4Hr1G055230.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Kfl00437_0020 kfl00437_0020_v1.1 (at1g48830 : 254.0) Ribosomal protein S7e family... 0.08 Orthogroups_2024-Update
LOC_Os05g27940 No alias 40S ribosomal protein S7, putative, expressed 0.04 Orthogroups_2024-Update
Mp6g08120.1 No alias component RPS7 of SSU proteome 0.19 Orthogroups_2024-Update
PSME_00000777-RA No alias (q9xet4|rs7_secce : 317.0) 40S ribosomal protein S7 -... 0.03 Orthogroups_2024-Update
Potri.006G087900 No alias Ribosomal protein S7e family protein 0.1 Orthogroups_2024-Update
Pp1s134_167V6 No alias 40s ribosomal protein expressed 0.19 Orthogroups_2024-Update
Pp1s152_7V6 No alias 40s ribosomal protein expressed 0.36 Orthogroups_2024-Update
Pp1s365_30V6 No alias 40S ribosomal protein S7 [Brassica oleracea] 0.13 Orthogroups_2024-Update
Pp1s49_260V6 No alias 40s ribosomal protein 0.18 Orthogroups_2024-Update
Seita.3G280800.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Seita.9G437500.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.26 Orthogroups_2024-Update
Sobic.001G403500.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.35 Orthogroups_2024-Update
Sobic.009G101700.2 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Solyc03g119360 No alias 40S ribosomal protein S7-like protein (AHRD V3.3 ***... 0.27 Orthogroups_2024-Update
Solyc06g069090 No alias 40S ribosomal protein S7-like protein (AHRD V3.3 ***... 0.33 Orthogroups_2024-Update
Sopen03g038230 No alias Ribosomal protein S7e 0.14 Orthogroups_2024-Update
Sopen06g026370 No alias Ribosomal protein S7e 0.35 Orthogroups_2024-Update
evm.model.contig_2068.1 No alias (at1g48830 : 206.0) Ribosomal protein S7e family... 0.36 Orthogroups_2024-Update
evm.model.tig00021682.9 No alias (q9xet4|rs7_secce : 233.0) 40S ribosomal protein S7 -... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000554 Ribosomal_S7e 7 186
No external refs found!