1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.C03010.1

Brara.C03010.1


Description : regulatory protein of RNA homeostasis


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C03010.1
Cluster HCAA Clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
A4A49_10593 No alias zinc finger ccch domain-containing protein zfn-like protein 0.03 Orthogroups_2024-Update
A4A49_36084 No alias zinc finger ccch domain-containing protein 32 0.01 Orthogroups_2024-Update
At3g02830 No alias Zinc finger CCCH domain-containing protein 33... 0.05 Orthogroups_2024-Update
At5g16540 No alias Zinc finger CCCH domain-containing protein 57... 0.05 Orthogroups_2024-Update
GRMZM2G087032 No alias zinc finger protein 1 0.04 Orthogroups_2024-Update
GRMZM2G107491 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
Glyma.10G020700 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
LOC_Os01g68860 No alias zinc finger C-x8-C-x5-C-x3-H type family protein, expressed 0.03 Orthogroups_2024-Update
PSME_00001974-RA No alias (q9swf9|zfnl_pea : 135.0) Zinc finger CCCH... 0.03 Orthogroups_2024-Update
Potri.019G053200 No alias zinc finger protein 1 0.04 Orthogroups_2024-Update
Seita.5G427800.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Sobic.005G111700.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Solyc11g008900 No alias Zinc finger transcription factor 65 0.06 Orthogroups_2024-Update
Sopen11g004680 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004564 beta-fructofuranosidase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 259 284
IPR000571 Znf_CCCH 305 330
IPR000571 Znf_CCCH 43 68
IPR000571 Znf_CCCH 88 112
IPR000571 Znf_CCCH 134 158
No external refs found!