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Description : component *(eL18) of large ribosomal-subunit (LSU) proteome
Gene families : OG_42_0002023 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002023_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.C03111.1 | |
| Cluster | HCAA Clusters: Cluster_254 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 267976 | No alias | ribosomal protein L18 | 0.15 | Orthogroups_2024-Update | |
| A4A49_59911 | No alias | 60s ribosomal protein l18-2 | 0.1 | Orthogroups_2024-Update | |
| A4A49_64192 | No alias | 60s ribosomal protein l18-2 | 0.12 | Orthogroups_2024-Update | |
| At3g05590 | No alias | RPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9] | 0.1 | Orthogroups_2024-Update | |
| At5g27850 | No alias | 60S ribosomal protein L18-3... | 0.06 | Orthogroups_2024-Update | |
| Bradi1g17970 | No alias | Ribosomal protein L18e/L15 superfamily protein | 0.09 | Orthogroups_2024-Update | |
| Bradi1g62930 | No alias | ribosomal protein L18 | 0.1 | Orthogroups_2024-Update | |
| Bradi2g35090 | No alias | Ribosomal protein L18e/L15 superfamily protein | 0.28 | Orthogroups_2024-Update | |
| Cre12.g512600 | No alias | ribosomal protein L18 | 0.29 | Orthogroups_2024-Update | |
| GRMZM2G104025 | No alias | Ribosomal protein L18e/L15 superfamily protein | 0.11 | Orthogroups_2024-Update | |
| GRMZM5G803952 | No alias | Ribosomal protein L18e/L15 superfamily protein | 0.1 | Orthogroups_2024-Update | |
| Glyma.03G215300 | No alias | Ribosomal protein L18e/L15 superfamily protein | 0.12 | Orthogroups_2024-Update | |
| Glyma.03G234600 | No alias | ribosomal protein L18 | 0.09 | Orthogroups_2024-Update | |
| Glyma.10G150800 | No alias | ribosomal protein L18 | 0.14 | Orthogroups_2024-Update | |
| Glyma.19G211800 | No alias | Ribosomal protein L18e/L15 superfamily protein | 0.08 | Orthogroups_2024-Update | |
| Glyma.19G232100 | No alias | ribosomal protein L18 | 0.05 | Orthogroups_2024-Update | |
| Glyma.20G237400 | No alias | ribosomal protein L18 | 0.17 | Orthogroups_2024-Update | |
| HORVU1Hr1G022570.1 | No alias | component *(eL18) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
| HORVU2Hr1G018820.1 | No alias | component *(eL18) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
| Kfl00174_0110 | kfl00174_0110_v1.1 | (at3g05590 : 286.0) Encodes cytoplasmic ribosomal... | 0.04 | Orthogroups_2024-Update | |
| LOC_Os03g22180 | No alias | 60S ribosomal protein L18-3, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os05g06310 | No alias | 60S ribosomal protein L18-3, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os07g47780 | No alias | 60S ribosomal protein L18-3, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| Mp1g22500.1 | No alias | component RPL18 of LSU proteome component | 0.15 | Orthogroups_2024-Update | |
| PSME_00010533-RA | No alias | (at5g27850 : 302.0) Ribosomal protein L18e/L15... | 0.13 | Orthogroups_2024-Update | |
| Potri.002G202800 | No alias | ribosomal protein L18 | 0.06 | Orthogroups_2024-Update | |
| Potri.005G023500 | No alias | ribosomal protein L18 | 0.07 | Orthogroups_2024-Update | |
| Potri.014G127300 | No alias | ribosomal protein L18 | 0.15 | Orthogroups_2024-Update | |
| Pp1s2_233V6 | No alias | 60s ribosomal protein l18 | 0.1 | Orthogroups_2024-Update | |
| Pp1s304_9V6 | No alias | 60s ribosomal protein l18 | 0.28 | Orthogroups_2024-Update | |
| Pp1s45_11V6 | No alias | 60s ribosomal protein l18 | 0.16 | Orthogroups_2024-Update | |
| Pp1s45_191V6 | No alias | 60s ribosomal protein l18 | 0.04 | Orthogroups_2024-Update | |
| Pp1s536_8V6 | No alias | 60s ribosomal protein l18 | 0.13 | Orthogroups_2024-Update | |
| Seita.2G430300.1 | No alias | component *(eL18) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
| Seita.7G267500.1 | No alias | component *(eL18) of large ribosomal-subunit (LSU) proteome | 0.16 | Orthogroups_2024-Update | |
| Seita.9G410200.1 | No alias | component *(eL18) of large ribosomal-subunit (LSU) proteome | 0.25 | Orthogroups_2024-Update | |
| Sobic.001G377800.2 | No alias | component *(eL18) of large ribosomal-subunit (LSU) proteome | 0.18 | Orthogroups_2024-Update | |
| Sobic.002G415500.1 | No alias | component *(eL18) of large ribosomal-subunit (LSU) proteome | 0.19 | Orthogroups_2024-Update | |
| Sobic.009G050300.1 | No alias | component *(eL18) of large ribosomal-subunit (LSU) proteome | 0.17 | Orthogroups_2024-Update | |
| Solyc01g099900 | No alias | 60S ribosomal protein L18, putative (AHRD V3.3 *** B9RFD6_RICCO) | 0.3 | Orthogroups_2024-Update | |
| Solyc09g075290 | No alias | 60S ribosomal protein L18, putative (AHRD V3.3 *** B9SAT7_RICCO) | 0.21 | Orthogroups_2024-Update | |
| Sopen01g043420 | No alias | Ribosomal protein L18e/L15 | 0.42 | Orthogroups_2024-Update | |
| Sopen09g030080 | No alias | Ribosomal protein L18e/L15 | 0.33 | Orthogroups_2024-Update | |
| evm.model.contig_3399.2 | No alias | (at3g05590 : 193.0) Encodes cytoplasmic ribosomal... | 0.47 | Orthogroups_2024-Update | |
| evm.model.tig00000142.18 | No alias | (o65729|rl18_cicar : 134.0) 60S ribosomal protein L18... | 0.21 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004017 | adenylate kinase activity | IEP | Predicted GO |
| MF | GO:0004455 | ketol-acid reductoisomerase activity | IEP | Predicted GO |
| MF | GO:0004637 | phosphoribosylamine-glycine ligase activity | IEP | Predicted GO |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0004819 | glutamine-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
| BP | GO:0006144 | purine nucleobase metabolic process | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
| BP | GO:0006425 | glutaminyl-tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0009112 | nucleobase metabolic process | IEP | Predicted GO |
| BP | GO:0009113 | purine nucleobase biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Predicted GO |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
| MF | GO:0016776 | phosphotransferase activity, phosphate group as acceptor | IEP | Predicted GO |
| MF | GO:0016874 | ligase activity | IEP | Predicted GO |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
| MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
| BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046112 | nucleobase biosynthetic process | IEP | Predicted GO |
| BP | GO:0046148 | pigment biosynthetic process | IEP | Predicted GO |
| MF | GO:0050145 | nucleoside monophosphate kinase activity | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR021131 | Ribosomal_L18e/L15P | 2 | 187 |
| No external refs found! |