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  5. Brara.C03174.1

Brara.C03174.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C03174.1
Cluster HCAA Clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
78556 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_06602 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
A4A49_27803 No alias putative polygalacturonase 0.04 Orthogroups_2024-Update
A4A49_41445 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
At3g16850 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
Bradi2g43750 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G113815 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00027467-RA No alias (at3g61490 : 556.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Pp1s16_66V6 No alias polygalacturonase 0.02 Orthogroups_2024-Update
Seita.4G004900.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Seita.8G220900.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.9G022500.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Solyc09g075460 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G16850.1) 0.03 Orthogroups_2024-Update
Sopen08g029810 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 138 422
No external refs found!