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  5. Brara.C03237.1

Brara.C03237.1


Description : polygalacturonase *(QRT2) & EC_3.2 glycosylase


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C03237.1
Cluster HCAA Clusters: Cluster_295

Target Alias Description ECC score Gene Family Method Actions
A4A49_07434 No alias putative polygalacturonase 0.04 Orthogroups_2024-Update
A4A49_14444 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
Bradi2g18060 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C03581.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.G02021.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
GRMZM2G004500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G224800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G140600 No alias polygalacturonase abscission zone A. thaliana 0.03 Orthogroups_2024-Update
LOC_Os02g03750 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00023335-RA No alias (at1g80170 : 293.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
Sopen03g032290 No alias Glycosyl hydrolases family 28 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009606 tropism IEP Predicted GO
BP GO:0010274 hydrotropism IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
MF GO:0019902 phosphatase binding IEP Predicted GO
MF GO:0019903 protein phosphatase binding IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 94 427
No external refs found!