Brara.C03264.1

Description : component *(uL4) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001916_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.C03264.1
Cluster	HCAA Clusters: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
166994	No alias	Ribosomal protein L4/L1 family	0.02	Orthogroups_2024-Update
Bradi1g05510	No alias	Ribosomal protein L4/L1 family	0.06	Orthogroups_2024-Update
Bradi1g55510	No alias	Ribosomal protein L4/L1 family	0.08	Orthogroups_2024-Update
Brara.A03522.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.E03076.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Glyma.13G136400	No alias	Ribosomal protein L4/L1 family	0.03	Orthogroups_2024-Update
Kfl00456_0100	kfl00456_0100_v1.1	(at3g09630 : 489.0) Ribosomal protein L4/L1 family;...	0.02	Orthogroups_2024-Update
MA_10434860g0020	No alias	(at3g09630 : 190.0) Ribosomal protein L4/L1 family;...	0.04	Orthogroups_2024-Update
Mp4g20310.1	No alias	component RPL4 of LSU proteome component	0.04	Orthogroups_2024-Update
Pp1s10_369V6	No alias	60s ribosomal protein l4	0.03	Orthogroups_2024-Update
Seita.9G056000.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.001G057300.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.002G054000.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Solyc09g007250	No alias	60S ribosomal protein L4 (AHRD V3.3 *** RL4_PRUAR)	0.04	Orthogroups_2024-Update
Sopen09g002120	No alias	Ribosomal protein L4/L1 family	0.04	Orthogroups_2024-Update
Sopen10g033800	No alias	Ribosomal protein L4/L1 family	0.04	Orthogroups_2024-Update
Sopen10g035380	No alias	Ribosomal protein L4/L1 family	0.04	Orthogroups_2024-Update
evm.model.contig_2049.5	No alias	(at3g09630 : 394.0) Ribosomal protein L4/L1 family;...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	Predicted GO
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	Predicted GO
MF	GO:0004784	superoxide dismutase activity	IEP	Predicted GO
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006353	DNA-templated transcription, termination	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008170	N-methyltransferase activity	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predicted GO
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Predicted GO
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR025755	Ribos_L4_C_dom	281	353
IPR002136	Ribosomal_L4/L1e	29	268

External Links

No external refs found!

Brara.C03264.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation