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  5. Brara.C03284.1

Brara.C03284.1


Description : component *(uL10) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0002448 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002448_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C03284.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
149765 No alias Ribosomal protein L10 family protein 0.05 Orthogroups_2024-Update
437282 No alias Ribosomal protein L10 family protein 0.16 Orthogroups_2024-Update
A4A49_07587 No alias 60s acidic ribosomal protein p0 0.06 Orthogroups_2024-Update
At2g40010 No alias 60S acidic ribosomal protein P0-1... 0.04 Orthogroups_2024-Update
At3g11250 No alias 60S acidic ribosomal protein P0-3... 0.1 Orthogroups_2024-Update
Bradi3g14340 No alias Ribosomal protein L10 family protein 0.28 Orthogroups_2024-Update
Cre12.g520500 No alias Ribosomal protein L10 family protein 0.1 Orthogroups_2024-Update
GRMZM2G066460 No alias Ribosomal protein L10 family protein 0.11 Orthogroups_2024-Update
GRMZM2G179976 No alias Ribosomal protein L10 family protein 0.11 Orthogroups_2024-Update
Glyma.02G255500 No alias Ribosomal protein L10 family protein 0.12 Orthogroups_2024-Update
Glyma.14G061100 No alias Ribosomal protein L10 family protein 0.1 Orthogroups_2024-Update
HORVU7Hr1G073720.5 No alias component *(uL10) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Kfl00006_0400 kfl00006_0400_v1.1 (p50346|rla0_soybn : 410.0) 60S acidic ribosomal protein... 0.05 Orthogroups_2024-Update
LOC_Os08g03640 No alias 60S acidic ribosomal protein P0, putative, expressed 0.05 Orthogroups_2024-Update
MA_10433058g0020 No alias (p50346|rla0_soybn : 423.0) 60S acidic ribosomal protein... 0.04 Orthogroups_2024-Update
Mp1g06170.1 No alias component RPP0 of LSU proteome component 0.05 Orthogroups_2024-Update
Mp1g07120.1 No alias component RPP0 of LSU proteome component 0.09 Orthogroups_2024-Update
PSME_00044294-RA No alias (p50346|rla0_soybn : 429.0) 60S acidic ribosomal protein... 0.07 Orthogroups_2024-Update
Potri.008G066200 No alias Ribosomal protein L10 family protein 0.03 Orthogroups_2024-Update
Potri.010G191200 No alias Ribosomal protein L10 family protein 0.05 Orthogroups_2024-Update
Pp1s38_196V6 No alias 60s acidic ribosomal protein 0.04 Orthogroups_2024-Update
Pp1s39_424V6 No alias 60s acidic ribosomal protein 0.02 Orthogroups_2024-Update
Seita.2G417900.1 No alias component *(uL10) of large ribosomal-subunit (LSU) proteome 0.21 Orthogroups_2024-Update
Seita.6G075100.1 No alias component *(uL10) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.007G029400.1 No alias component *(uL10) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
Solyc05g054580 No alias 60S acidic ribosomal protein P0 (AHRD V3.3 *** K4C2D6_SOLLC) 0.17 Orthogroups_2024-Update
Sopen05g033060 No alias 60s Acidic ribosomal protein 0.04 Orthogroups_2024-Update
evm.model.contig_3715.5 No alias (o24573|rla0_maize : 264.0) 60S acidic ribosomal protein... 0.24 Orthogroups_2024-Update
evm.model.tig00000615.69 No alias (p41095|rla0_orysa : 288.0) 60S acidic ribosomal protein... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 6 107
No external refs found!