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  5. Brara.C03372.1

Brara.C03372.1


Description : lignin polymerization scaffold protein *(CASP)


Gene families : OG_42_0000213 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C03372.1
Cluster HCAA Clusters: Cluster_402

Target Alias Description ECC score Gene Family Method Actions
A4A49_32977 No alias casp-like protein 1f1 0.02 Orthogroups_2024-Update
At2g27370 No alias Casparian strip membrane protein 3... 0.04 Orthogroups_2024-Update
At4g20390 No alias CASP-like protein 1B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP0] 0.03 Orthogroups_2024-Update
Glyma.03G209700 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Glyma.07G196300 No alias Uncharacterised protein family (UPF0497) 0.02 Orthogroups_2024-Update
Potri.008G205000 No alias Uncharacterised protein family (UPF0497) 0.04 Orthogroups_2024-Update
Potri.009G131400 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002682 regulation of immune system process IEP Predicted GO
BP GO:0002831 regulation of response to biotic stimulus IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0008199 ferric iron binding IEP Predicted GO
BP GO:0010112 regulation of systemic acquired resistance IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0031347 regulation of defense response IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0032101 regulation of response to external stimulus IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043900 regulation of multi-organism process IEP Predicted GO
BP GO:0045088 regulation of innate immune response IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050776 regulation of immune response IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006702 CASP_dom 41 189
No external refs found!