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Description : component *(uS7) of small ribosomal-subunit (SSU) proteome
Gene families : OG_42_0002111 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002111_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.C03392.1 | |
| Cluster | HCAA Clusters: Cluster_8 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 164593 | No alias | ribosomal protein 5A | 0.07 | Orthogroups_2024-Update | |
| 271466 | No alias | ribosomal protein 5B | 0.04 | Orthogroups_2024-Update | |
| A4A49_35794 | No alias | 40s ribosomal protein s5-2 | 0.07 | Orthogroups_2024-Update | |
| Bradi2g03760 | No alias | ribosomal protein 5A | 0.1 | Orthogroups_2024-Update | |
| Bradi4g41050 | No alias | ribosomal protein 5B | 0.1 | Orthogroups_2024-Update | |
| Brara.C01872.1 | No alias | component *(uS7) of small ribosomal-subunit (SSU) proteome | 0.18 | Orthogroups_2024-Update | |
| Brara.E02892.1 | No alias | component *(uS7) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Cre06.g290950 | No alias | ribosomal protein 5B | 0.25 | Orthogroups_2024-Update | |
| GRMZM2G078985 | No alias | ribosomal protein 5A | 0.11 | Orthogroups_2024-Update | |
| Glyma.02G167900 | No alias | ribosomal protein 5B | 0.08 | Orthogroups_2024-Update | |
| Glyma.09G103400 | No alias | ribosomal protein 5B | 0.11 | Orthogroups_2024-Update | |
| Glyma.12G201900 | No alias | ribosomal protein 5B | 0.07 | Orthogroups_2024-Update | |
| Glyma.13G300300 | No alias | ribosomal protein 5B | 0.06 | Orthogroups_2024-Update | |
| HORVU3Hr1G015190.2 | No alias | component *(uS7) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
| Kfl00737_0010 | kfl00737_0010_v1.1 | (o65731|rs5_cicar : 338.0) 40S ribosomal protein S5... | 0.08 | Orthogroups_2024-Update | |
| MA_10428487g0010 | No alias | (at2g37270 : 350.0) One of two genes encoding the... | 0.04 | Orthogroups_2024-Update | |
| Mp3g10570.1 | No alias | component RPS5 of SSU proteome | 0.15 | Orthogroups_2024-Update | |
| Potri.006G197700 | No alias | ribosomal protein 5B | 0.07 | Orthogroups_2024-Update | |
| Pp1s10_385V6 | No alias | 40s ribosomal protein s5 | 0.15 | Orthogroups_2024-Update | |
| Pp1s400_33V6 | No alias | 40s ribosomal protein s5 | 0.02 | Orthogroups_2024-Update | |
| Seita.5G065000.1 | No alias | component *(uS7) of small ribosomal-subunit (SSU) proteome | 0.21 | Orthogroups_2024-Update | |
| Seita.8G114300.1 | No alias | component *(uS7) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Sobic.003G109600.2 | No alias | component *(uS7) of small ribosomal-subunit (SSU) proteome | 0.24 | Orthogroups_2024-Update | |
| Solyc10g078620 | No alias | Ribosomal protein S5/S7 (AHRD V3.3 *** A0A103XH68_CYNCS) | 0.23 | Orthogroups_2024-Update | |
| Solyc11g042610 | No alias | Ribosomal protein S5/S7 (AHRD V3.3 *** A0A103XH68_CYNCS) | 0.12 | Orthogroups_2024-Update | |
| Sopen10g029250 | No alias | Ribosomal protein S7p/S5e | 0.15 | Orthogroups_2024-Update | |
| Sopen11g018760 | No alias | Ribosomal protein S7p/S5e | 0.07 | Orthogroups_2024-Update | |
| evm.model.contig_670.1 | No alias | (o65731|rs5_cicar : 298.0) 40S ribosomal protein S5... | 0.22 | Orthogroups_2024-Update | |
| evm.model.tig00021332.10 | No alias | (o65731|rs5_cicar : 303.0) 40S ribosomal protein S5... | 0.18 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Predicted GO |
| MF | GO:0001181 | RNA polymerase I general transcription initiation factor activity | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
| BP | GO:0006361 | transcription initiation from RNA polymerase I promoter | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| CC | GO:0035145 | exon-exon junction complex | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
| CC | GO:0044422 | organelle part | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| MF | GO:0140223 | general transcription initiation factor activity | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR023798 | Ribosomal_S7_dom | 61 | 207 |
| No external refs found! |