Brara.C03804.1

Description : transcription factor *(A/B-GATA)

Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.C03804.1
Cluster	HCAA Clusters: Cluster_397

Target	Alias	Description	ECC score	Gene Family Method
A4A49_09786	No alias	gata transcription factor 2	0.05	Orthogroups_2024-Update
A4A49_15410	No alias	gata transcription factor 12	0.04	Orthogroups_2024-Update
A4A49_17145	No alias	gata transcription factor 8	0.03	Orthogroups_2024-Update
A4A49_39670	No alias	gata transcription factor 11	0.03	Orthogroups_2024-Update
Bradi1g78540	No alias	GATA transcription factor 2	0.03	Orthogroups_2024-Update
Bradi2g12590	No alias	GATA transcription factor 23	0.02	Orthogroups_2024-Update
Bradi2g49620	No alias	GATA transcription factor 12	0.03	Orthogroups_2024-Update
Bradi2g62660	No alias	GATA transcription factor 17	0.01	Orthogroups_2024-Update
Bradi3g08240	No alias	GATA type zinc finger transcription factor family protein	0.02	Orthogroups_2024-Update
Brara.G01891.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
GRMZM2G379005	No alias	GATA transcription factor 12	0.03	Orthogroups_2024-Update
Glyma.08G187300	No alias	GATA transcription factor 29	0.04	Orthogroups_2024-Update
Glyma.10G126900	No alias	GATA transcription factor 1	0.02	Orthogroups_2024-Update
HORVU3Hr1G071030.2	No alias	transcription factor *(A/B-GATA)	0.02	Orthogroups_2024-Update
HORVU6Hr1G088370.6	No alias	transcription factor *(A/B-GATA)	0.02	Orthogroups_2024-Update
PSME_00026073-RA	No alias	(at5g66320 : 163.0) Encodes GATA transcription factor...	0.03	Orthogroups_2024-Update
Potri.001G188500	No alias	GATA transcription factor 9	0.03	Orthogroups_2024-Update
Potri.003G174800	No alias	GATA transcription factor 1	0.04	Orthogroups_2024-Update
Potri.005G066100	No alias	GATA transcription factor 12	0.03	Orthogroups_2024-Update
Seita.1G358400.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Seita.9G325200.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Solyc09g075610	No alias	GATA transcription factor, putative (AHRD V3.3 *** B9RNI7_RICCO)	0.02	Orthogroups_2024-Update
Solyc10g018560	No alias	GATA transcription factor (AHRD V3.3 *** K4CYY0_SOLLC)	0.03	Orthogroups_2024-Update
Sopen01g036490	No alias	GATA zinc finger	0.02	Orthogroups_2024-Update
Sopen03g006450	No alias	GATA zinc finger	0.02	Orthogroups_2024-Update
Sopen11g028220	No alias	GATA zinc finger	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006950	response to stress	IEP	Predicted GO
MF	GO:0008131	primary amine oxidase activity	IEP	Predicted GO
BP	GO:0008285	negative regulation of cell proliferation	IEP	Predicted GO
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predicted GO
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
BP	GO:0042127	regulation of cell proliferation	IEP	Predicted GO
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO
MF	GO:0048038	quinone binding	IEP	Predicted GO
BP	GO:0048519	negative regulation of biological process	IEP	Predicted GO
BP	GO:0048523	negative regulation of cellular process	IEP	Predicted GO
BP	GO:0050896	response to stimulus	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	151	187

External Links

No external refs found!

Brara.C03804.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation