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  5. Brara.C03915.1

Brara.C03915.1


Description : component *(eL42) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001870 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001870_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Brassica rapa: Brara.C03915.1
Cluster HCAA Clusters: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
161986 No alias Zinc-binding ribosomal protein family protein 0.1 Orthogroups_2024-Update
A4A49_42104 No alias 60s ribosomal protein l44 0.08 Orthogroups_2024-Update
A4A49_63762 No alias 60s ribosomal protein l44 0.04 Orthogroups_2024-Update
At3g23390 No alias 60S ribosomal protein L36a... 0.05 Orthogroups_2024-Update
At4g14320 No alias Zinc-binding ribosomal protein family protein... 0.07 Orthogroups_2024-Update
Bradi1g28750 No alias Zinc-binding ribosomal protein family protein 0.02 Orthogroups_2024-Update
Brara.D00648.1 No alias component *(eL42) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.G00538.1 No alias component *(eL42) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.H01878.1 No alias component *(eL42) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre06.g310700 No alias Zinc-binding ribosomal protein family protein 0.08 Orthogroups_2024-Update
Glyma.05G120700 No alias Zinc-binding ribosomal protein family protein 0.03 Orthogroups_2024-Update
Glyma.08G075500 No alias Zinc-binding ribosomal protein family protein 0.03 Orthogroups_2024-Update
Glyma.08G181300 No alias Zinc-binding ribosomal protein family protein 0.05 Orthogroups_2024-Update
Glyma.15G051000 No alias Zinc-binding ribosomal protein family protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G081590.1 No alias component *(eL42) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU5Hr1G101600.1 No alias component *(eL42) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Kfl00989_0050 kfl00989_0050_v1.1 (q96499|rl44_goshi : 200.0) 60S ribosomal protein L44 -... 0.03 Orthogroups_2024-Update
LOC_Os07g33997 No alias 60S ribosomal protein L44, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g25770.1 No alias component RPL36a of LSU proteome component 0.07 Orthogroups_2024-Update
PSME_00003754-RA No alias (at4g14320 : 164.0) Zinc-binding ribosomal protein... 0.05 Orthogroups_2024-Update
Pp1s115_63V6 No alias 60s ribosomal protein l44 0.08 Orthogroups_2024-Update
Pp1s22_326V6 No alias 60s ribosomal protein l44 0.09 Orthogroups_2024-Update
Pp1s2_415V6 No alias 60s ribosomal protein l44 0.09 Orthogroups_2024-Update
Pp1s6_198V6 No alias 60s ribosomal protein l44 0.04 Orthogroups_2024-Update
Pp1s74_73V6 No alias 60s ribosomal protein l44 0.1 Orthogroups_2024-Update
Seita.9G438600.1 No alias component *(eL42) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.001G018800.1 No alias component *(eL42) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Sobic.002G175100.1 No alias component *(eL42) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Solyc03g112850 No alias 60S ribosomal protein L44 (AHRD V3.3 *** RL44_GOSHI) 0.07 Orthogroups_2024-Update
Solyc06g071530 No alias 60S ribosomal protein L44 (AHRD V3.3 *** RL44_GOSHI) 0.07 Orthogroups_2024-Update
Sopen03g031930 No alias Ribosomal protein L44 0.06 Orthogroups_2024-Update
Sopen06g027820 No alias Ribosomal protein L44 0.07 Orthogroups_2024-Update
evm.model.contig_2517.1 No alias (at4g14320 : 166.0) Zinc-binding ribosomal protein... 0.09 Orthogroups_2024-Update
evm.model.tig00000489.11 No alias (q96499|rl44_goshi : 166.0) 60S ribosomal protein L44 -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000552 Ribosomal_L44e 19 94
No external refs found!