Brara.C04211.1

Description : regulatory protein *(AP1/CAL/FUL) of floral meristem identity control & MADS/AGL-type transcription factor

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.C04211.1
Cluster	HCAA Clusters: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
At2g24840	No alias	Agamous-like MADS-box protein AGL61...	0.03	Orthogroups_2024-Update
Bradi4g34680	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Brara.B03740.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.03	Orthogroups_2024-Update
Brara.D01347.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.H01578.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I04053.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.K00198.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Glyma.02G287700	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
HORVU1Hr1G047560.2	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.03	Orthogroups_2024-Update
HORVU3Hr1G095090.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
HORVU3Hr1G095200.15	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
MA_276701g0010	No alias	(at2g45660 : 110.0) Controls flowering and is required...	0.03	Orthogroups_2024-Update
PSME_00043819-RA	No alias	(at4g16370 : 692.0) Encodes an oligopeptide transporter...	0.02	Orthogroups_2024-Update
Potri.007G073000	No alias	K-box region and MADS-box transcription factor family protein	0.04	Orthogroups_2024-Update
Solyc01g105800	No alias	MADS box transcription factor (AHRD V1 **--...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Predicted GO
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Predicted GO
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Predicted GO
MF	GO:0004620	phospholipase activity	IEP	Predicted GO
MF	GO:0004629	phospholipase C activity	IEP	Predicted GO
CC	GO:0005680	anaphase-promoting complex	IEP	Predicted GO
CC	GO:0005739	mitochondrion	IEP	Predicted GO
BP	GO:0007088	regulation of mitotic nuclear division	IEP	Predicted GO
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Predicted GO
BP	GO:0010564	regulation of cell cycle process	IEP	Predicted GO
BP	GO:0010965	regulation of mitotic sister chromatid separation	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
BP	GO:0030071	regulation of mitotic metaphase/anaphase transition	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Predicted GO
BP	GO:0033043	regulation of organelle organization	IEP	Predicted GO
BP	GO:0033044	regulation of chromosome organization	IEP	Predicted GO
BP	GO:0033045	regulation of sister chromatid segregation	IEP	Predicted GO
BP	GO:0033047	regulation of mitotic sister chromatid segregation	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051783	regulation of nuclear division	IEP	Predicted GO
BP	GO:0051983	regulation of chromosome segregation	IEP	Predicted GO
BP	GO:0090231	regulation of spindle checkpoint	IEP	Predicted GO
BP	GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint	IEP	Predicted GO
BP	GO:1901976	regulation of cell cycle checkpoint	IEP	Predicted GO
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Predicted GO
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Predicted GO
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	IEP	Predicted GO
BP	GO:1903504	regulation of mitotic spindle checkpoint	IEP	Predicted GO
BP	GO:1905818	regulation of chromosome separation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	86	172

External Links

No external refs found!

Brara.C04211.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation