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  5. Brara.C04220.1

Brara.C04220.1


Description : Unknown function


Gene families : OG_42_0001960 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C04220.1
Cluster HCAA Clusters: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
Bradi1g18930 No alias DEA(D/H)-box RNA helicase family protein 0.09 Orthogroups_2024-Update
Bradi1g20340 No alias RNA helicase 36 0.03 Orthogroups_2024-Update
Cre12.g505200 No alias DEA(D/H)-box RNA helicase family protein 0.08 Orthogroups_2024-Update
Cre16.g683500 No alias RNA helicase 36 0.01 Orthogroups_2024-Update
GRMZM2G075027 No alias DEA(D/H)-box RNA helicase family protein 0.05 Orthogroups_2024-Update
Glyma.03G014900 No alias DEA(D/H)-box RNA helicase family protein 0.05 Orthogroups_2024-Update
Glyma.15G261600 No alias RNA helicase 36 0.05 Orthogroups_2024-Update
Potri.007G068800 No alias DEA(D/H)-box RNA helicase family protein 0.04 Orthogroups_2024-Update
Seita.6G237900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G527300.2 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.002G387500.1 No alias SSU processome assembly factor *(SWA3) 0.03 Orthogroups_2024-Update
Solyc10g007550 No alias RNA helicase DEAD31 0.03 Orthogroups_2024-Update
evm.model.tig00020848.20 No alias (at5g60990 : 445.0) DEA(D/H)-box RNA helicase family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030686 90S preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 33 212
IPR001650 Helicase_C 250 355
No external refs found!