Brara.C04297.1

Description : component *(uL24) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0002250 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.C04297.1
Cluster	HCAA Clusters: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
227399	No alias	Translation protein SH3-like family protein	0.13	Orthogroups_2024-Update
A4A49_01785	No alias	60s ribosomal protein l26-1	0.03	Orthogroups_2024-Update
A4A49_64025	No alias	60s ribosomal protein l26-1	0.1	Orthogroups_2024-Update
At5g67510	No alias	60S ribosomal protein L26-2...	0.04	Orthogroups_2024-Update
Cre01.g040000	No alias	Translation protein SH3-like family protein	0.21	Orthogroups_2024-Update
Glyma.11G048100	No alias	Translation protein SH3-like family protein	0.2	Orthogroups_2024-Update
Glyma.13G243100	No alias	Translation protein SH3-like family protein	0.09	Orthogroups_2024-Update
Glyma.13G245300	No alias	Translation protein SH3-like family protein	0.13	Orthogroups_2024-Update
Glyma.15G068500	No alias	Translation protein SH3-like family protein	0.07	Orthogroups_2024-Update
HORVU3Hr1G026880.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Kfl00486_0110	kfl00486_0110_v1.1	(at3g49910 : 157.0) Translation protein SH3-like family...	0.03	Orthogroups_2024-Update
LOC_Os12g05430	No alias	ribosomal protein L24, putative, expressed	0.02	Orthogroups_2024-Update
MA_13141g0010	No alias	(at5g67510 : 168.0) Translation protein SH3-like family...	0.08	Orthogroups_2024-Update
Mp2g12870.1	No alias	component RPL26 of LSU proteome component	0.05	Orthogroups_2024-Update
PSME_00027135-RA	No alias	(at5g67510 : 172.0) Translation protein SH3-like family...	0.07	Orthogroups_2024-Update
Potri.005G082600	No alias	Translation protein SH3-like family protein	0.04	Orthogroups_2024-Update
Potri.007G055900	No alias	Translation protein SH3-like family protein	0.06	Orthogroups_2024-Update
Potri.007G085200	No alias	Translation protein SH3-like family protein	0.06	Orthogroups_2024-Update
Pp1s120_90V6	No alias	putative ribosomal protein L26 [Oryza sativa (japonica...	0.16	Orthogroups_2024-Update
Pp1s13_138V6	No alias	60s ribosomal protein	0.15	Orthogroups_2024-Update
Pp1s30_298V6	No alias	60s ribosomal protein	0.2	Orthogroups_2024-Update
Pp1s59_51V6	No alias	K9I9.7; 60S ribosomal protein L26 (RPL26B) [KO:K02898]...	0.05	Orthogroups_2024-Update
Pp1s69_191V6	No alias	putative ribosomal protein L26 [Oryza sativa (japonica...	0.1	Orthogroups_2024-Update
Seita.5G096600.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.25	Orthogroups_2024-Update
Sobic.003G078200.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.32	Orthogroups_2024-Update
Solyc02g064670	No alias	60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH)	0.19	Orthogroups_2024-Update
Solyc02g092430	No alias	60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH)	0.24	Orthogroups_2024-Update
Solyc03g044000	No alias	60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH)	0.07	Orthogroups_2024-Update
Sopen02g014760	No alias	KOW motif	0.25	Orthogroups_2024-Update
Sopen02g036980	No alias	KOW motif	0.05	Orthogroups_2024-Update
Sopen03g007800	No alias	KOW motif	0.03	Orthogroups_2024-Update
evm.model.contig_2053.5	No alias	(at5g67510 : 146.0) Translation protein SH3-like family...	0.29	Orthogroups_2024-Update
evm.model.tig00000144.60	No alias	(at3g49910 : 158.0) Translation protein SH3-like family...	0.15	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	IEA	16Dec
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003883	CTP synthase activity	IEP	Predicted GO
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Predicted GO
MF	GO:0005347	ATP transmembrane transporter activity	IEP	Predicted GO
MF	GO:0005471	ATP:ADP antiporter activity	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006862	nucleotide transport	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predicted GO
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015217	ADP transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015238	drug transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015301	anion:anion antiporter activity	IEP	Predicted GO
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015748	organophosphate ester transport	IEP	Predicted GO
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:0099516	ion antiporter activity	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005824	KOW	51	82
IPR005756	Ribosomal_L26/L24P_euk/arc	8	121

External Links

No external refs found!

Brara.C04297.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation