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  5. Brara.C04316.1

Brara.C04316.1


Description : Unknown function


Gene families : OG_42_0003994 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003994_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C04316.1
Cluster HCAA Clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
136241 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
80365 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Seita.5G358700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G134600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen02g034930 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 452 473
IPR002885 Pentatricopeptide_repeat 352 379
IPR002885 Pentatricopeptide_repeat 279 306
IPR002885 Pentatricopeptide_repeat 380 407
IPR002885 Pentatricopeptide_repeat 250 272
IPR002885 Pentatricopeptide_repeat 552 575
IPR002885 Pentatricopeptide_repeat 47 74
IPR002885 Pentatricopeptide_repeat 175 222
IPR002885 Pentatricopeptide_repeat 478 525
No external refs found!