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  5. Brara.C04446.1

Brara.C04446.1


Description : Unknown function


Gene families : OG_42_0000213 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C04446.1
Cluster HCAA Clusters: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
At4g25040 No alias CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3] 0.03 Orthogroups_2024-Update
Brara.F03733.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.K01555.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.15G097600 No alias Uncharacterised protein family (UPF0497) 0.04 Orthogroups_2024-Update
Glyma.19G099500 No alias Uncharacterised protein family (UPF0497) 0.04 Orthogroups_2024-Update
Potri.001G442300 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Potri.008G088700 No alias Uncharacterised protein family (UPF0497) 0.04 Orthogroups_2024-Update
Sobic.002G113100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc05g007790 No alias CASP-like protein (AHRD V3.3 *** K4BWV4_SOLLC) 0.03 Orthogroups_2024-Update
Sopen06g028910 No alias Domain of unknown function (DUF588) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR006702 CASP_dom 26 175
No external refs found!