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  5. Brara.C04688.1

Brara.C04688.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C04688.1
Cluster HCAA Clusters: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Brara.E02481.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Glyma.07G067000 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.09G041000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os09g26800 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G100000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Solyc08g081480 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G23500.1) 0.03 Orthogroups_2024-Update
Solyc08g082170 No alias Pectin lyase-like superfamily protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 164 443
No external refs found!