Description : component *(uL1c) of large plastid ribosomal-subunit proteome
Gene families : OG_42_0002710 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002710_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.D00006.1 | |
Cluster | HCAA Clusters: Cluster_23 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At3g63490 | No alias | 50S ribosomal protein L1, chloroplastic... | 0.03 | Orthogroups_2024-Update | |
Bradi2g26940 | No alias | Ribosomal protein L1p/L10e family | 0.03 | Orthogroups_2024-Update | |
Cre02.g088900 | No alias | Ribosomal protein L1p/L10e family | 0.07 | Orthogroups_2024-Update | |
Kfl00555_0070 | kfl00555_0070_v1.1 | (at3g63490 : 328.0) Ribosomal protein L1p/L10e family;... | 0.02 | Orthogroups_2024-Update | |
Mp1g07500.1 | No alias | component psRPL1 of large ribosomal subunit proteome | 0.05 | Orthogroups_2024-Update | |
Potri.001G262400 | No alias | Ribosomal protein L1p/L10e family | 0.02 | Orthogroups_2024-Update | |
Potri.009G057100 | No alias | Ribosomal protein L1p/L10e family | 0.05 | Orthogroups_2024-Update | |
Seita.3G258100.1 | No alias | component *(uL1c) of large plastid ribosomal-subunit proteome | 0.03 | Orthogroups_2024-Update | |
Solyc01g087730 | No alias | Ribosomal protein (AHRD V3.3 *** K4AYG3_SOLLC) | 0.05 | Orthogroups_2024-Update | |
Sopen01g034680 | No alias | Ribosomal protein L1p/L10e family | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_487.5 | No alias | (q9le95|rk1_spiol : 240.0) 50S ribosomal protein L1,... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
CC | GO:0005575 | cellular_component | IEP | Predicted GO |
CC | GO:0005783 | endoplasmic reticulum | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | Predicted GO |
BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR028364 | Ribosomal_L1/biogenesis | 135 | 325 |
No external refs found! |