Brara.D00084.1


Description : ARF-type transcription factor


Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D00084.1
Cluster HCAA Clusters: Cluster_320

Target Alias Description ECC score Gene Family Method Actions
A4A49_18499 No alias auxin response factor 19 0.03 Orthogroups_2024-Update
At1g19850 No alias Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993] 0.04 Orthogroups_2024-Update
Bradi3g28950 No alias auxin response factor 16 0.03 Orthogroups_2024-Update
Brara.F01355.1 No alias ARF-type transcription factor & auxin signal mediator... 0.06 Orthogroups_2024-Update
Brara.F01415.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G02608.1 No alias ARF-type transcription factor 0.07 Orthogroups_2024-Update
GRMZM2G034840 No alias Transcriptional factor B3 family protein /... 0.03 Orthogroups_2024-Update
GRMZM2G081406 No alias auxin response factor 16 0.04 Orthogroups_2024-Update
Glyma.06G265460 No alias auxin response factor 6 0.03 Orthogroups_2024-Update
Glyma.15G091000 No alias auxin response factor 8 0.04 Orthogroups_2024-Update
Glyma.17G047100 No alias Transcriptional factor B3 family protein /... 0.04 Orthogroups_2024-Update
LOC_Os01g70270 No alias auxin response factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g35140 No alias auxin response factor 7, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g36054 No alias auxin response factor 9, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g41950 No alias auxin response factor, putative, expressed 0.03 Orthogroups_2024-Update
Mp4g11820.1 No alias transcription factor (ARF) 0.02 Orthogroups_2024-Update
PSME_00035831-RA No alias (at4g30080 : 162.0) Involved in root cap cell... 0.02 Orthogroups_2024-Update
PSME_00045746-RA No alias (at4g30080 : 87.8) Involved in root cap cell... 0.02 Orthogroups_2024-Update
Seita.3G020000.1 No alias ARF-type transcription factor 0.02 Orthogroups_2024-Update
Seita.3G147000.1 No alias ARF-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.006G255300.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Solyc04g081240 No alias No description available 0.04 Orthogroups_2024-Update
Solyc07g043620 No alias Auxin Response Factor 6B 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
BP GO:0009725 response to hormone IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0003896 DNA primase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 127 227
IPR033389 AUX/IAA_dom 443 487
IPR033389 AUX/IAA_dom 491 535
IPR010525 Auxin_resp 253 332
No external refs found!