Brara.D00349.1

Description : component *(eS26) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0002386 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002386_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.D00349.1
Cluster	HCAA Clusters: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
77589	No alias	Ribosomal protein S26e family protein	0.08	Orthogroups_2024-Update
At2g40590	No alias	40S ribosomal protein S26...	0.05	Orthogroups_2024-Update
At3g56340	No alias	40S ribosomal protein S26...	0.03	Orthogroups_2024-Update
Bradi1g04070	No alias	Ribosomal protein S26e family protein	0.08	Orthogroups_2024-Update
Bradi2g53590	No alias	Ribosomal protein S26e family protein	0.06	Orthogroups_2024-Update
Brara.D02473.1	No alias	component *(eS26) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Cre16.g682300	No alias	Ribosomal protein S26e family protein	0.05	Orthogroups_2024-Update
GRMZM5G827266	No alias	Ribosomal protein S26e family protein	0.04	Orthogroups_2024-Update
GRMZM5G899149	No alias	Ribosomal protein S26e family protein	0.04	Orthogroups_2024-Update
Glyma.02G239700	No alias	Ribosomal protein S26e family protein	0.04	Orthogroups_2024-Update
Glyma.14G208600	No alias	Ribosomal protein S26e family protein	0.04	Orthogroups_2024-Update
HORVU5Hr1G111820.1	No alias	component *(eS26) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Kfl00199_0140	kfl00199_0140_v1.1	(at3g56340 : 92.0) Ribosomal protein S26e family...	0.02	Orthogroups_2024-Update
LOC_Os01g60790	No alias	40S ribosomal protein S26, putative, expressed	0.04	Orthogroups_2024-Update
MA_74546g0010	No alias	(p49216\|rs26_orysa : 123.0) 40S ribosomal protein S26...	0.06	Orthogroups_2024-Update
Mp2g06210.1	No alias	component RPS26 of SSU proteome	0.03	Orthogroups_2024-Update
Potri.013G093700	No alias	Ribosomal protein S26e family protein	0.04	Orthogroups_2024-Update
Potri.019G057000	No alias	Ribosomal protein S26e family protein	0.06	Orthogroups_2024-Update
Pp1s169_19V6	No alias	40s ribosomal protein s26	0.05	Orthogroups_2024-Update
Pp1s270_77V6	No alias	40s ribosomal protein s26	0.07	Orthogroups_2024-Update
Pp1s375_10V6	No alias	40s ribosomal protein s26	0.04	Orthogroups_2024-Update
Seita.3G205000.1	No alias	component *(eS26) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Seita.9G038300.1	No alias	component *(eS26) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Sobic.001G039400.2	No alias	component *(eS26) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Sobic.009G173500.1	No alias	component *(eS26) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Solyc04g008810	No alias	40S ribosomal S26-like protein (AHRD V3.3 *** I3S2G2_MEDTR)	0.07	Orthogroups_2024-Update
Solyc06g007470	No alias	40S ribosomal S26-like protein (AHRD V3.3 *** I3S2G2_MEDTR)	0.06	Orthogroups_2024-Update
Sopen04g003990	No alias	Ribosomal protein S26e	0.09	Orthogroups_2024-Update
Sopen06g002380	No alias	Ribosomal protein S26e	0.07	Orthogroups_2024-Update
evm.model.contig_2478.1	No alias	(at3g56340 : 94.4) Ribosomal protein S26e family...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Predicted GO
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003916	DNA topoisomerase activity	IEP	Predicted GO
MF	GO:0003937	IMP cyclohydrolase activity	IEP	Predicted GO
MF	GO:0004017	adenylate kinase activity	IEP	Predicted GO
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	Predicted GO
MF	GO:0004019	adenylosuccinate synthase activity	IEP	Predicted GO
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predicted GO
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	Predicted GO
CC	GO:0005680	anaphase-promoting complex	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006163	purine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006188	IMP biosynthetic process	IEP	Predicted GO
BP	GO:0006259	DNA metabolic process	IEP	Predicted GO
BP	GO:0006265	DNA topological change	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predicted GO
BP	GO:0009117	nucleotide metabolic process	IEP	Predicted GO
BP	GO:0009165	nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0016842	amidine-lyase activity	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019238	cyclohydrolase activity	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0019637	organophosphate metabolic process	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0046040	IMP metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predicted GO
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predicted GO
BP	GO:0071103	DNA conformation change	IEP	Predicted GO
BP	GO:0072521	purine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:0090407	organophosphate biosynthetic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Predicted GO
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000892	Ribosomal_S26e	1	106

External Links

No external refs found!

Brara.D00349.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation