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  5. Brara.D00556.1

Brara.D00556.1


Description : component *(eL24) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0002119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D00556.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
438784 No alias Ribosomal protein L24e family protein 0.09 Orthogroups_2024-Update
A4A49_17501 No alias 60s ribosomal protein l24 0.06 Orthogroups_2024-Update
A4A49_57589 No alias 60s ribosomal protein l24 0.03 Orthogroups_2024-Update
At2g36620 No alias 60S ribosomal protein L24-1... 0.06 Orthogroups_2024-Update
At3g53020 No alias 60S ribosomal protein L24-2... 0.04 Orthogroups_2024-Update
Bradi2g53220 No alias ribosomal protein L24 0.04 Orthogroups_2024-Update
Bradi3g38917 No alias ribosomal protein L24 0.05 Orthogroups_2024-Update
Brara.E00829.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Cre09.g391097 No alias Ribosomal protein L24e family protein 0.14 Orthogroups_2024-Update
Glyma.03G189300 No alias ribosomal protein L24 0.15 Orthogroups_2024-Update
Glyma.10G066500 No alias ribosomal protein L24 0.15 Orthogroups_2024-Update
Glyma.13G151600 No alias ribosomal protein L24 0.14 Orthogroups_2024-Update
Glyma.19G189600 No alias ribosomal protein L24 0.11 Orthogroups_2024-Update
HORVU3Hr1G080130.4 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Kfl00039_0160 kfl00039_0160_v1.1 (p50888|rl24_horvu : 181.0) 60S ribosomal protein L24 -... 0.06 Orthogroups_2024-Update
LOC_Os01g59990 No alias ribosomal protein L24, putative, expressed 0.03 Orthogroups_2024-Update
Mp5g17510.1 No alias pri-miRNA recruitment factor (STV1). component RPL24 of... 0.02 Orthogroups_2024-Update
PSME_00007704-RA No alias (p50888|rl24_horvu : 205.0) 60S ribosomal protein L24 -... 0.11 Orthogroups_2024-Update
Potri.003G123101 No alias ribosomal protein L24 0.09 Orthogroups_2024-Update
Pp1s140_99V6 No alias 60s ribosomal protein l24 0.04 Orthogroups_2024-Update
Pp1s5_366V6 No alias 60s ribosomal protein l24 0.13 Orthogroups_2024-Update
Pp1s60_272V6 No alias 60s ribosomal protein l24 0.04 Orthogroups_2024-Update
Pp1s63_123V6 No alias 60s ribosomal protein l24 0.13 Orthogroups_2024-Update
Pp1s74_148V6 No alias 60s ribosomal protein l24 0.07 Orthogroups_2024-Update
Seita.2G084800.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Seita.3G199800.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Seita.5G358600.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Sobic.001G175300.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Sobic.009G177700.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Solyc09g008800 No alias 60S ribosomal protein L24 (AHRD V3.3 *** RL24_PRUAV) 0.22 Orthogroups_2024-Update
Solyc10g083740 No alias 60S ribosomal protein L24 (AHRD V3.3 *** RL24_PRUAV) 0.18 Orthogroups_2024-Update
Solyc10g085480 No alias 60S ribosomal protein L24 (AHRD V3.3 *** RL24_PRUAV) 0.12 Orthogroups_2024-Update
Sopen09g003590 No alias Ribosomal protein L24e 0.23 Orthogroups_2024-Update
Sopen10g033210 No alias Exostosin family 0.14 Orthogroups_2024-Update
Sopen10g034910 No alias Ribosomal protein L24e 0.17 Orthogroups_2024-Update
evm.model.contig_2706.7 No alias (at3g53020 : 122.0) RPL24B encodes ribosomal protein... 0.26 Orthogroups_2024-Update
evm.model.tig00001093.9 No alias no hits & (original description: no original description) 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006754 ATP biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009141 nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
BP GO:0009260 ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046034 ATP metabolic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046390 ribose phosphate biosynthetic process IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000988 Ribosomal_L24e-rel 4 67
No external refs found!