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  5. Brara.D00589.1

Brara.D00589.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D00589.1
Cluster HCAA Clusters: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
416356 No alias plant U-box 24 0.02 Orthogroups_2024-Update
426053 No alias plant U-box 24 0.02 Orthogroups_2024-Update
At1g49780 No alias U-box domain-containing protein 26... 0.04 Orthogroups_2024-Update
GRMZM2G041141 No alias plant U-box 26 0.04 Orthogroups_2024-Update
Glyma.02G242900 No alias CYS, MET, PRO, and GLY protein 1 0.03 Orthogroups_2024-Update
Glyma.05G192100 No alias plant U-box 25 0.04 Orthogroups_2024-Update
Glyma.08G000400 No alias plant U-box 25 0.05 Orthogroups_2024-Update
Glyma.10G262600 No alias plant U-box 22 0.03 Orthogroups_2024-Update
Glyma.11G178046 No alias plant U-box 24 0.02 Orthogroups_2024-Update
Glyma.12G095000 No alias plant U-box 24 0.03 Orthogroups_2024-Update
HORVU2Hr1G105720.3 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os02g46500 No alias U-box, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g34030 No alias U-box domain-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10432179g0010 No alias (at3g52450 : 121.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
MA_311559g0010 No alias (at3g52450 : 124.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
MA_415393g0010 No alias (at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS... 0.05 Orthogroups_2024-Update
MA_684442g0010 No alias (at3g52450 : 140.0) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
MA_84154g0010 No alias (at3g19380 : 196.0) plant U-box 25 (PUB25); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00043995-RA No alias (at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS... 0.03 Orthogroups_2024-Update
Potri.002G070500 No alias plant U-box 29 0.02 Orthogroups_2024-Update
Potri.007G110600 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
Potri.008G137700 No alias ARM repeat superfamily protein 0.07 Orthogroups_2024-Update
Potri.009G016100 No alias plant U-box 24 0.05 Orthogroups_2024-Update
Potri.012G042600 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G031000 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G186200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G095100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G441100.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.010G102000.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc01g005160 No alias Avr9/Cf-9 rapidly elicited protein 1 0.04 Orthogroups_2024-Update
Solyc01g080920 No alias LOW QUALITY:U-box domain-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update
Solyc01g107980 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Solyc04g008100 No alias U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI) 0.03 Orthogroups_2024-Update
Solyc11g068940 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
BP GO:0016567 protein ubiquitination IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 7 76
No external refs found!