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  5. Brara.D00592.1

Brara.D00592.1


Description : Qa-type SYP1-group component of SNARE membrane fusion complex


Gene families : OG_42_0000336 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000336_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D00592.1
Cluster HCAA Clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
At1g61290 No alias Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791] 0.02 Orthogroups_2024-Update
HORVU3Hr1G115630.1 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.03 Orthogroups_2024-Update
HORVU4Hr1G011180.1 No alias Qa-type component *(KNOLLE) of SNARE cell-plate vesicle... 0.02 Orthogroups_2024-Update
LOC_Os03g57310 No alias syntaxin, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g07200 No alias syntaxin, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g34510 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
PSME_00018503-RA No alias (at1g08560 : 208.0) member of SYP11 syntaxin Gene... 0.03 Orthogroups_2024-Update
Potri.004G035400 No alias syntaxin of plants 124 0.02 Orthogroups_2024-Update
Potri.013G056100 No alias syntaxin of plants 132 0.03 Orthogroups_2024-Update
Pp1s98_68V6 No alias Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 0.03 Orthogroups_2024-Update
Seita.9G063400.1 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.02 Orthogroups_2024-Update
Sobic.001G064900.1 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.03 Orthogroups_2024-Update
Sopen07g026100 No alias SNARE domain 0.04 Orthogroups_2024-Update
Sopen10g032370 No alias SNARE domain 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 250 302
IPR006011 Syntaxin_N 46 249
No external refs found!