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  5. Brara.D00684.1

Brara.D00684.1


Description : serine hydroxymethyltransferase *(SHM) & EC_2.1 transferase transferring one-carbon group


Gene families : OG_42_0000626 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D00684.1
Cluster HCAA Clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
A4A49_06356 No alias serine hydroxymethyltransferase 3, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_25960 No alias serine hydroxymethyltransferase, mitochondrial 0.03 Orthogroups_2024-Update
A4A49_31930 No alias serine hydroxymethyltransferase 7 0.05 Orthogroups_2024-Update
At1g22020 No alias Serine hydroxymethyltransferase 6... 0.04 Orthogroups_2024-Update
Potri.002G090200 No alias serine hydroxymethyltransferase 7 0.04 Orthogroups_2024-Update
Potri.005G170800 No alias serine hydroxymethyltransferase 7 0.03 Orthogroups_2024-Update
Seita.5G025900.1 No alias serine hydroxymethyltransferase *(SHM) & EC_2.1... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009092 homoserine metabolic process IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
BP GO:0019346 transsulfuration IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050667 homocysteine metabolic process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0070402 NADPH binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 13 411
No external refs found!