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  5. Brara.D00705.1

Brara.D00705.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D00705.1
Cluster HCAA Clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
107192 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At4g37170 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.04 Orthogroups_2024-Update
Glyma.10G148000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G036010.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G105080.1 No alias RNA editing factor *(OTP85) 0.03 Orthogroups_2024-Update
Seita.4G008500.1 No alias RNA editing factor *(CRR22) 0.02 Orthogroups_2024-Update
Seita.8G163400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G478900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g081020 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen03g029160 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 966 1058
IPR002885 Pentatricopeptide_repeat 550 580
IPR002885 Pentatricopeptide_repeat 119 142
IPR002885 Pentatricopeptide_repeat 520 542
IPR002885 Pentatricopeptide_repeat 216 243
IPR002885 Pentatricopeptide_repeat 623 643
IPR002885 Pentatricopeptide_repeat 318 343
IPR002885 Pentatricopeptide_repeat 722 744
IPR002885 Pentatricopeptide_repeat 248 273
IPR002885 Pentatricopeptide_repeat 447 493
IPR002885 Pentatricopeptide_repeat 751 798
IPR002885 Pentatricopeptide_repeat 346 392
IPR002885 Pentatricopeptide_repeat 650 693
No external refs found!