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  5. Brara.D01126.1

Brara.D01126.1


Description : component *(XPF) of DNA repair endonuclease complex


Gene families : OG_42_0007180 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007180_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D01126.1
Cluster HCAA Clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Mp3g00960.1 No alias XPF component of DNA repair endonuclease complex 0.02 Orthogroups_2024-Update
Sobic.001G544200.1 No alias component *(XPF) of DNA repair endonuclease complex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0004518 nuclease activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006166 ERCC4_domain 727 855
No external refs found!